Name: Psychromonas antarctica star-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13518

Type strain:

Species: Psychromonas antarctica

Strain Designation: star-1

Culture col. no.: DSM 10704

Strain history: <- D. O. Mountfort; star-1

NCBI tax ID(s): 67573 (species)

SI-ID 87945

DSM 10704

Special Collections

DSMZ

Section

Psychromonas antarctica star-1 is a Gram-negative bacterium that was isolated from pond sediment.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Psychromonadaceae*
	Genus	*Psychromonas*
	Species	**Psychromonas antarctica**
	Full Scientific Name (LPSN)	Psychromonas antarctica corrig. Mountfort et al. 1998

Synonym

Psychromonas antarcticus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4047]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #4047]

Culture medium growth

[Ref.: #4047]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4047]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4047]			growth	12 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %90.801

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4047]	Sample type/isolated from	pond sediment
[Ref.: #4047]	Geographic location (country and/or sea, region)	McMurdo Sound
[Ref.: #4047]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4047]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4047]	Psychromonas antarcticus 16S rRNA gene, partial	Y14697	1499	GenBank ENA	67573 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Psychromonas antarctica DSM 10704	GCA_022267535	contig	GenBank ENA	67573 tax ID	*

[Ref.: #4047]

GC-content

42.8±0.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Psychromonas antarctica DSM 10704 NCBI: GCA_022267535.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	83.11	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	61.757	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.801	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.424	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	65.358	no

Availability in culture collections External links

[Ref.: #4047]

Culture collection no.

DSM 10704

[Ref.: #82709]

SI-ID 87945

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Whole-Genome Sequence of Psychromonas antarctica Strain DSM 10704.	Chandaluri S, Thomas JC	Microbiol Resour Announc	10.1128/mra.00141-22	2022	*
Phylogeny	Psychromonas boydii sp. nov., a gas-vacuolate, psychrophilic bacterium isolated from an Arctic sea-ice core.	Auman AJ, Breezee JL, Gosink JJ, Schumann P, Barnes CR, Kampfer P, Staley JT	Int J Syst Evol Microbiol	10.1099/ijs.0.007773-0	2009	*
Phylogeny	Psychromonas antarcticus gen. nov., sp. nov., A new aerotolerant anaerobic, halophilic psychrophile isolated from pond sediment of the McMurdo ice shelf, antarctica	Mountfort DO, Rainey FA, Burghardt J, Kaspar HF, Stackebrandt E	Arch Microbiol	10.1007/s002030050566	1998	*

References

#4047

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10704

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82709

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID87945.1 )

* These data were automatically processed and therefore are not curated

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Psychromonas antarctica DSM 10704

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