Strain identifier
BacDive ID: 13518
Type strain: 
Species: Psychromonas antarctica
Strain Designation: star-1
Strain history: <- D. O. Mountfort; star-1
NCBI tax ID(s): 67573 (species)
version 8.1 (current version)
General
@ref: 4047
BacDive-ID: 13518
DSM-Number: 10704
keywords: genome sequence, 16S sequence, Bacteria, psychrophilic
description: Psychromonas antarctica star-1 is a psychrophilic bacterium that was isolated from pond sediment.
NCBI tax id
- NCBI tax id: 67573
- Matching level: species
strain history
- @ref: 4047
- history: <- D. O. Mountfort; star-1
doi: 10.13145/bacdive13518.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Psychromonadaceae
- genus: Psychromonas
- species: Psychromonas antarctica
- full scientific name: Psychromonas antarctica corrig. Mountfort et al. 1998
synonyms
- @ref: 20215
- synonym: Psychromonas antarcticus
@ref: 4047
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Psychromonadaceae
genus: Psychromonas
species: Psychromonas antarctica
full scientific name: Psychromonas antarctica Mountfort et al. 1998
strain designation: star-1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4047
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 4047
- growth: positive
- type: growth
- temperature: 12
- range: psychrophilic
Isolation, sampling and environmental information
isolation
- @ref: 4047
- sample type: pond sediment
- geographic location: McMurdo Sound
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Pond (small) |
| #Environmental | #Aquatic | #Sediment |
Safety information
risk assessment
- @ref: 4047
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4047
- description: Psychromonas antarcticus 16S rRNA gene, partial
- accession: Y14697
- length: 1499
- database: ena
- NCBI tax ID: 67573
Genome sequences
- @ref: 66792
- description: Psychromonas antarctica DSM 10704
- accession: GCA_022267535
- assembly level: contig
- database: ncbi
- NCBI tax ID: 67573
GC content
- @ref: 4047
- GC-content: 42.8±0.2
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 80.335 | no |
| gram-positive | no | 98.956 | no |
| anaerobic | no | 93.928 | no |
| aerobic | no | 78.04 | no |
| halophile | no | 57.811 | no |
| spore-forming | no | 95.368 | no |
| motile | yes | 81.859 | no |
| glucose-ferment | yes | 67.474 | no |
| thermophile | no | 98.942 | no |
| glucose-util | yes | 86.502 | no |
External links
@ref: 4047
culture collection no.: DSM 10704
straininfo link
- @ref: 82709
- straininfo: 87945
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 9477258 | Psychromonas antarcticus gen. nov., sp. nov., A new aerotolerant anaerobic, halophilic psychrophile isolated from pond sediment of the McMurdo ice shelf, antarctica | Mountfort DO, Rainey FA, Burghardt J, Kaspar HF, Stackebrandt E | Arch Microbiol | 10.1007/s002030050566 | 1998 | ||
| Phylogeny | 19648341 | Psychromonas boydii sp. nov., a gas-vacuolate, psychrophilic bacterium isolated from an Arctic sea-ice core. | Auman AJ, Breezee JL, Gosink JJ, Schumann P, Barnes CR, Kampfer P, Staley JT | Int J Syst Evol Microbiol | 10.1099/ijs.0.007773-0 | 2009 | Alaska, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Gammaproteobacteria/*classification/cytology/genetics/*isolation & purification, Gases/metabolism, Ice Cover/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Vacuoles/metabolism | Metabolism |
| Genetics | 35467384 | Whole-Genome Sequence of Psychromonas antarctica Strain DSM 10704. | Chandaluri S, Thomas JC | Microbiol Resour Announc | 10.1128/mra.00141-22 | 2022 |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4047 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10704) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10704 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 82709 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID87945.1 | StrainInfo: A central database for resolving microbial strain identifiers |