Strain identifier

BacDive ID: 13518

Type strain: Yes

Species: Psychromonas antarctica

Strain Designation: star-1

Strain history: <- D. O. Mountfort; star-1

NCBI tax ID(s): 67573 (species)

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General

@ref: 4047

BacDive-ID: 13518

DSM-Number: 10704

keywords: genome sequence, 16S sequence, Bacteria, Gram-negative

description: Psychromonas antarctica star-1 is a Gram-negative bacterium that was isolated from pond sediment.

NCBI tax id

  • NCBI tax id: 67573
  • Matching level: species

strain history

  • @ref: 4047
  • history: <- D. O. Mountfort; star-1

doi: 10.13145/bacdive13518.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Psychromonadaceae
  • genus: Psychromonas
  • species: Psychromonas antarctica
  • full scientific name: Psychromonas antarctica corrig. Mountfort et al. 1998

  • synonyms

    • @ref: 20215
    • synonym: Psychromonas antarcticus

@ref: 4047

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Psychromonadaceae

genus: Psychromonas

species: Psychromonas antarctica

full scientific name: Psychromonas antarctica Mountfort et al. 1998

strain designation: star-1

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99

Culture and growth conditions

culture medium

  • @ref: 4047
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 4047
  • growth: positive
  • type: growth
  • temperature: 12

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 90.801

Isolation, sampling and environmental information

isolation

  • @ref: 4047
  • sample type: pond sediment
  • geographic location: McMurdo Sound
  • continent: Australia and Oceania

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Pond (small)
#Environmental#Aquatic#Sediment

Safety information

risk assessment

  • @ref: 4047
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 4047
  • description: Psychromonas antarcticus 16S rRNA gene, partial
  • accession: Y14697
  • length: 1499
  • database: nuccore
  • NCBI tax ID: 67573

Genome sequences

  • @ref: 66792
  • description: Psychromonas antarctica DSM 10704
  • accession: GCA_022267535
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 67573

GC content

  • @ref: 4047
  • GC-content: 42.8±0.2

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno99no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no83.11no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no61.757no
69480spore-formingspore-formingAbility to form endo- or exosporesno90.801no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno96.424yes
69480flagellatedmotile2+Ability to perform flagellated movementyes65.358no

External links

@ref: 4047

culture collection no.: DSM 10704

straininfo link

  • @ref: 82709
  • straininfo: 87945

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny9477258Psychromonas antarcticus gen. nov., sp. nov., A new aerotolerant anaerobic, halophilic psychrophile isolated from pond sediment of the McMurdo ice shelf, antarcticaMountfort DO, Rainey FA, Burghardt J, Kaspar HF, Stackebrandt EArch Microbiol10.1007/s0020300505661998
Phylogeny19648341Psychromonas boydii sp. nov., a gas-vacuolate, psychrophilic bacterium isolated from an Arctic sea-ice core.Auman AJ, Breezee JL, Gosink JJ, Schumann P, Barnes CR, Kampfer P, Staley JTInt J Syst Evol Microbiol10.1099/ijs.0.007773-02009Alaska, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Gammaproteobacteria/*classification/cytology/genetics/*isolation & purification, Gases/metabolism, Ice Cover/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Vacuoles/metabolismMetabolism
Genetics35467384Whole-Genome Sequence of Psychromonas antarctica Strain DSM 10704.Chandaluri S, Thomas JCMicrobiol Resour Announc10.1128/mra.00141-222022

Reference

@idauthorscataloguedoi/urltitle
4047Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10704)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10704
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
82709Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID87945.1StrainInfo: A central database for resolving microbial strain identifiers