Name: Allokutzneria albata R761-7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13509

Type strain:

Species: Allokutzneria albata

Strain Designation: R761-7

Culture col. no.: DSM 44149, ATCC 55061, JCM 9917, KCTC 9837, NBRC 101910, NRRL B-24461, CGMCC 4.1881, NCIMB 13433

Strain history: ATCC 55061 <-- Bristol-Myers Squibb Co.; R761-7.

NCBI tax ID(s): 211114 (species)

SI-ID 43515

ATCC 55061, DSM 44149, JCM 9917, KCTC 9837, NCIMB 13433, NBRC 101910, NRRL B-24461, CGMCC 4.1881

Other strains from Allokutzneria albata

A. albata CCUG 47667

Section

Allokutzneria albata R761-7 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Allokutzneria*
	Species	**Allokutzneria albata**
	Full Scientific Name (LPSN)	Allokutzneria albata (Tomita et al. 1993) Labeda and Kroppenstedt 2008

Synonym

Kibdelosporangium albatum

Information on morphological and physiological properties Morphology

[Ref.: #20007]	Colony color	Beige (1001)
[Ref.: #20007]	Incubation period	10-14 days
[Ref.: #20007]	Cultivation medium used	ISP 2

[Ref.: #20007]	Colony color	Beige (1001)
[Ref.: #20007]	Incubation period	10-14 days
[Ref.: #20007]	Cultivation medium used	ISP 3

[Ref.: #20007]	Colony color	Beige (1001)
[Ref.: #20007]	Incubation period	10-14 days
[Ref.: #20007]	Cultivation medium used	ISP 4

[Ref.: #20007]	Colony color	Beige (1001)
[Ref.: #20007]	Incubation period	10-14 days
[Ref.: #20007]	Cultivation medium used	ISP 5

[Ref.: #20007]	Colony color	Beige (1001)
[Ref.: #20007]	Incubation period	10-14 days
[Ref.: #20007]	Cultivation medium used	ISP 6

[Ref.: #20007]	Colony color	Beige (1001)
[Ref.: #20007]	Incubation period	10-14 days
[Ref.: #20007]	Cultivation medium used	ISP 7

[Ref.: #20007]	Multicellular complex forming ability	yes
[Ref.: #20007]	Multicellular complex name	Aerial Mycelium
[Ref.: #20007]	Multicellular complex color	White
[Ref.: #20007]	Medium Name (multicellularity)	ISP 2

[Ref.: #20007]	Multicellular complex forming ability	yes
[Ref.: #20007]	Multicellular complex name	Aerial Mycelium
[Ref.: #20007]	Multicellular complex color	White
[Ref.: #20007]	Medium Name (multicellularity)	ISP 3

[Ref.: #20007]	Multicellular complex forming ability	yes
[Ref.: #20007]	Multicellular complex name	Aerial Mycelium
[Ref.: #20007]	Multicellular complex color	White
[Ref.: #20007]	Medium Name (multicellularity)	ISP 4

[Ref.: #20007]	Multicellular complex forming ability	yes
[Ref.: #20007]	Multicellular complex name	Aerial Mycelium
[Ref.: #20007]	Multicellular complex color	White
[Ref.: #20007]	Medium Name (multicellularity)	ISP 5

[Ref.: #20007]	Multicellular complex forming ability	yes
[Ref.: #20007]	Multicellular complex name	Aerial Mycelium
[Ref.: #20007]	Multicellular complex color	White
[Ref.: #20007]	Medium Name (multicellularity)	ISP 6

[Ref.: #20007]	Multicellular complex forming ability	yes
[Ref.: #20007]	Multicellular complex name	Aerial Mycelium
[Ref.: #20007]	Multicellular complex color	White
[Ref.: #20007]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11549]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #11549]

Culture medium growth

[Ref.: #11549]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11549]

Culture medium composition

expand / minimize

[Ref.: #20007]

Culture medium

ISP 2

[Ref.: #20007]

Culture medium growth

[Ref.: #20007]

Culture medium composition

expand / minimize

[Ref.: #20007]

Culture medium

ISP 3

[Ref.: #20007]

Culture medium growth

[Ref.: #20007]

Culture medium composition

expand / minimize

[Ref.: #20007]

Culture medium

ISP 4

[Ref.: #20007]

Culture medium growth

[Ref.: #20007]

Culture medium composition

expand / minimize

[Ref.: #20007]

Culture medium

ISP 5

[Ref.: #20007]

Culture medium growth

[Ref.: #20007]

Culture medium composition

expand / minimize

[Ref.: #20007]

Culture medium

ISP 6

[Ref.: #20007]

Culture medium growth

[Ref.: #20007]

Culture medium composition

expand / minimize

[Ref.: #20007]

Culture medium

ISP 7

[Ref.: #20007]

Culture medium growth

[Ref.: #20007]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #11549]	growth	28 °C
[Ref.: #20007]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #11549]	Temperature range	mesophilic
[Ref.: #20007]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #20007]	Spore description	Formation of spore chains, spore surface smooth
[Ref.: #20007]	Ability of spore formation	yes

[Ref.: #11549]	Name of produced compound	cycloviracins
[Ref.: #20007]	Name of produced compound	Cycloviracin B

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #20007]		NaCl		growth	0	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄) (67%), MK-9(H₂), MK-9(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #20007]	arabinose ChEBI	+
[Ref.: #20007]	cellulose ChEBI	-
[Ref.: #68368]	D-glucose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	-	fermentation	* from API 20E
[Ref.: #20007]	fructose ChEBI	+
[Ref.: #20007]	glucose ChEBI	+
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #20007]	mannitol ChEBI	+
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #20007]	myo-inositol ChEBI	+
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	nitrate ChEBI	-	reduction	* from API 20E
[Ref.: #20007]	raffinose ChEBI	-
[Ref.: #20007]	rhamnose ChEBI	+
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #20007]	sucrose ChEBI	+
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #20007]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	cycloviracin B1	yes
[Ref.: #67770]	cycloviracin B2	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	dinitrogen ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E
[Ref.: #68368]	nitrite ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #20007]	602	+	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #11549]	17853	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20007]	796	not determinedn.d.	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	-
[Ref.: #11549]	14074	-	+	+/-	+/-	-	+	+/-	+/-	-	+/-	+	+/-	-	+	-	+/-	+/-	+	+	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	aminopropanol phosphate biosynthesis	100	2 of 2
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	resorcinol degradation	100	2 of 2
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	proline metabolism	90.91	10 of 11
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	pyrimidine metabolism	88.89	40 of 45
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	d-mannose degradation	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	87.5	7 of 8
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	glutathione metabolism	85.71	12 of 14
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	aclacinomycin biosynthesis	85.71	6 of 7
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	85.71	24 of 28
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	urea cycle	84.62	11 of 13
[Ref.: #66794]	purine metabolism	84.04	79 of 94
[Ref.: #66794]	histidine metabolism	82.76	24 of 29
[Ref.: #66794]	vitamin B12 metabolism	82.35	28 of 34
[Ref.: #66794]	glycolysis	82.35	14 of 17
[Ref.: #66794]	tryptophan metabolism	81.58	31 of 38
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	alanine metabolism	79.31	23 of 29
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	degradation of hexoses	77.78	14 of 18
[Ref.: #66794]	allantoin degradation	77.78	7 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	methionine metabolism	76.92	20 of 26
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	degradation of sugar alcohols	75	12 of 16
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	cyclohexanol degradation	75	3 of 4
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	75	9 of 12
[Ref.: #66794]	toluene degradation	75	3 of 4
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	lipid metabolism	74.19	23 of 31
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	oxidative phosphorylation	72.53	66 of 91
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	tyrosine metabolism	71.43	10 of 14
[Ref.: #66794]	degradation of pentoses	71.43	20 of 28
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	arginine metabolism	70.83	17 of 24
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	polyamine pathway	69.57	16 of 23
[Ref.: #66794]	vitamin B1 metabolism	69.23	9 of 13
[Ref.: #66794]	degradation of sugar acids	68	17 of 25
[Ref.: #66794]	lysine metabolism	66.67	28 of 42
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	66.67	2 of 3
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	phenol degradation	65	13 of 20
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	sulfate reduction	61.54	8 of 13
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	61.54	8 of 13
[Ref.: #66794]	D-cycloserine biosynthesis	60	3 of 5
[Ref.: #66794]	glycine metabolism	60	6 of 10
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	carotenoid biosynthesis	59.09	13 of 22
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	58.82	10 of 17
[Ref.: #66794]	androgen and estrogen metabolism	56.25	9 of 16
[Ref.: #66794]	daunorubicin biosynthesis	55.56	5 of 9
[Ref.: #66794]	ascorbate metabolism	54.55	12 of 22
[Ref.: #66794]	3-phenylpropionate degradation	53.33	8 of 15
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	sphingosine metabolism	50	3 of 6
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	arachidonic acid metabolism	44.44	8 of 18
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	chlorophyll metabolism	38.89	7 of 18
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	methanogenesis from CO2	25	3 of 12
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11549]	Sample type/isolated from	soil
[Ref.: #11549]	Geographic location (country and/or sea, region)	Mindanao Island
[Ref.: #11549]	Country	Philippines
[Ref.: #11549]	Country ISO 3 Code	PHL
[Ref.: #11549]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Mindanao Island
[Ref.: #67770]	Country	Philippines
[Ref.: #67770]	Country ISO 3 Code	PHL
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ512462 (>99% sequence identity) for Allokutzneria albata from Microbeatlas

Aquatic Samples	23
Soil Samples	861
Animal Samples	33
Plant Samples	27
Total Samples	944

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11549]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20007]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11549]	Kibdelosporangium albatum 16S rRNA gene, type strain DSM 44149T	AJ512462	1489	ENA	211114 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Allokutzneria albata NRRL B-24461	GCA_000720955	contig	GenBank	211114 tax ID
[Ref.: #66792]	Allokutzneria albata DSM 44149	GCA_900103775	chromosome	GenBank	211114 tax ID	*
[Ref.: #66792]	Allokutzneria albata strain DSM 44149	211114.4	complete	PATRIC	211114 tax ID	*
[Ref.: #66792]	Allokutzneria albata DSM 44149	2634166198	draft	JGI IMG/M	211114 tax ID	*

[Ref.: #11549]	GC-content	71.6 mol%
[Ref.: #67770]	GC-content	71.7 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	70.3 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Allokutzneria albata strain DSM 44149 PATRIC: 211114.4
[Ref.: #69480]	motile	no	88.675	no
[Ref.: #69480]	gram-positive	yes	90.439	no
[Ref.: #69480]	anaerobic	no	98.791	no
[Ref.: #69480]	aerobic	yes	92.551	no
[Ref.: #69480]	halophile	no	85.987	no
[Ref.: #69480]	spore-forming	yes	94.452	yes
[Ref.: #69480]	glucose-util	yes	88.677	yes
[Ref.: #69480]	flagellated	no	96.309	no
[Ref.: #69480]	thermophile	no	98.602	no
[Ref.: #69480]	glucose-ferment	no	90.698	yes

Availability in culture collections External links

[Ref.: #11549]

Culture collection no.

DSM 44149, ATCC 55061, JCM 9917, KCTC 9837, NBRC 101910, NRRL B-24461, CGMCC 4.1881, NCIMB 13433

[Ref.: #82701]

SI-ID 43515

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Allokutzneria oryzae sp. nov., isolated from rhizospheric soil of Oryza sativa L.	Duangmal K, Poomthongdee N, Pathom-Aree W, Take A, Thamchaipenet A, Matsumoto A, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.065169-0	2014	*
Phylogeny	Allokutzneria multivorans sp. nov., an actinomycete isolated from soil.	Cao YR, Chen X, Jiang Y, Wang LS, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.054411-0	2013	*
Phylogeny	Proposal for the new genus Allokutzneria gen. nov. within the suborder Pseudonocardineae and transfer of Kibdelosporangium albatum Tomita et al. 1993 as Allokutzneria albata comb. nov.	Labeda DP, Kroppenstedt RM	Int J Syst Evol Microbiol	10.1099/ijs.0.65474-0	2008	*
Phylogeny	Kibdelosporangium albatum sp. nov., producer of the antiviral antibiotics cycloviracins.	Tomita K, Hoshino Y, Miyaki T	Int J Syst Bacteriol	10.1099/00207713-43-2-297	1993	*
Phylogeny	New antiviral antibiotics, cycloviracins B1 and B2. I. Production, isolation, physico-chemical properties and biological activity.	Tsunakawa M, Komiyama N, Tenmyo O, Tomita K, Kawano K, Kotake C, Konishi M, Oki T	J Antibiot (Tokyo)	10.7164/antibiotics.45.1467	1992	*

References

#11549

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44149

#20007

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82701

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID43515.1 )

* These data were automatically processed and therefore are not curated

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Allokutzneria albata strain DSM 44149

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