Achromobacter dolens (CIP 110711, LMG 26840, CCUG 62421)

Name: Achromobacter dolens (CIP 110711, LMG 26840, CCUG 62421)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134918

Type strain

Strain Designation Vandamme R-47430, LiPuma AU4012, AU4012, R-47430

Culture col. no. CIP 110711 LMG 26840 CCUG 62421 Vandamme R-47430 LiPuma AU4012 3 more

NCBI tax ID(s) 1287738

Special Collections CCUG CIP

Links

Achromobacter dolens Vandamme R-47430 is an aerobe, mesophilic, Gram-negative prokaryote of the family Alcaligenaceae.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 376265

DSM 115983,LMG 26840,CCUG 62421,CCUG 6242

@ref 20215

Last LPSN update 2025-12-16 10:02:10

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter dolens

Full scientific name Achromobacter dolens Vandamme et al. 2014

BacDive ID	Other strains from **Achromobacter dolens** (3)	Type strain
156522	A. dolens CCUG 62422, LMG 26841
156523	A. dolens CCUG 62423, LMG 26842
157181	A. dolens CCUG 70224

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.828
33592	negative

Colony morphology

62833

Incubation period1 day

Culture and growth conditions

Culture medium

@ref	Name	Composition
33592	MEDIUM 72- for trypto casein soja agar	Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
33592	CIP Medium 72
125150	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
125150	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
62833	positive	growth	37	mesophilic
125150	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
62833	aerobe
125438	aerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		96.1

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
33592	+	-	-	-	-	-	-	-	+	-	+	-	-	-	+	-	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Fluids	#Sputum
#Host	#Human	-
#Infection	#Patient	-

Isolation

@ref	Country	Country ISO 3 Code	Continent
33592	USA	USA	North America
62833	USA	USA	North America
33592	United States of America	USA	North America
125150	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
33592	1	Risk group (French classification)
125150	2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	LMG 26840 assembly for Achromobacter dolens LMG 26840	contig	GCA_902859745	1287738.5	2900088174	1287738	55.83

Genome browser: GCA_902859745

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Achromobacter dolens partial 16S rRNA gene, type strain LMG 26840T	HF586509	1483		1287738

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Achromobacter dolens LMG 26840
NCBI: GCA_902859745

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.10	no
125439	motility	BacteriaNetⓘ	yes	83.00	no
125439	gram_stain	BacteriaNetⓘ	negative	89.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Achromobacter dolens strain LMG 26840
PATRIC: 1287738.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.83	no
125438	anaerobic	anaerobicⓘ	no	98.16	no
125438	spore-forming	spore-formingⓘ	no	88.98	no
125438	aerobic	aerobicⓘ	yes	91.24	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	85.88	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Development of a Simple and Accurate Molecular Protocol Using 16SrRNA for Species-Specific Identification of Achromobacter spp.	Saitta GM, Veschetti L, Feletti R, Sandri A, Boaretti M, Melotti P, Carelli M, Lleo MM, Malerba G, Signoretto C.	Pathogens	10.3390/pathogens14030271	2025
Genetics	Comparative phenotypic and genotypic antimicrobial susceptibility surveillance in Achromobacter spp. through whole genome sequencing.	Ray S, Flemming LK, Scudder CJ, Ly MA, Porterfield HS, Smith RD, Clark AE, Johnson JK, Das S.	Microbiol Spectr	10.1128/spectrum.02527-24	2025
	Cefiderocol susceptibility of Achromobacter spp.: study of an accurately identified collection of 230 strains.	Jean-Pierre V, Sorlin P, Pantel A, Chiron R, Lavigne JP, Jeannot K, Marchandin H, Collaborative study group on antimicrobial resistance of Achromobacter spp..	Ann Clin Microbiol Antimicrob	10.1186/s12941-024-00709-z	2024
Phylogeny	Use of nrdA gene sequence clustering to estimate the prevalence of different Achromobacter species among Cystic Fibrosis patients in the UK.	Coward A, Kenna DT, Perry C, Martin K, Doumith M, Turton JF.	J Cyst Fibros	10.1016/j.jcf.2015.09.005	2016
Phylogeny	Bacterial and Symbiodiniaceae communities' variation in corals with distinct traits and geographical distribution.	Villela LB, da Silva-Lima AW, Moreira APB, Aiube YRA, Ribeiro FV, Villela HDM, Majzoub ME, Amario M, de Moura RL, Thomas T, Peixoto RS, Salomon PS.	Sci Rep	10.1038/s41598-024-70121-2	2024
	In Vitro Activities of beta-Lactam-beta-Lactamase Inhibitor Antimicrobial Agents against Cystic Fibrosis Respiratory Pathogens.	Caverly LJ, Spilker T, Kalikin LM, Stillwell T, Young C, Huang DB, LiPuma JJ.	Antimicrob Agents Chemother	10.1128/aac.01595-19	2019
	Prevalence and variability of siderophore production in the Achromobacter genus.	Sorlin P, Brivet E, Jean-Pierre V, Aujoulat F, Besse A, Dupont C, Chiron R, Jumas-Bilak E, Menetrey Q, Marchandin H.	Microbiol Spectr	10.1128/spectrum.02953-23	2024
Genetics	Intrapatient diversity of Achromobacter spp. involved in chronic colonization of Cystic Fibrosis airways.	Dupont C, Michon AL, Jumas-Bilak E, Norskov-Lauritsen N, Chiron R, Marchandin H.	Infect Genet Evol	10.1016/j.meegid.2015.03.012	2015
Phylogeny	Duplex real-time PCR assay for the simultaneous detection of Achromobacter xylosoxidans and Achromobacter spp.	Price EP, Soler Arango V, Kidd TJ, Fraser TA, Nguyen TK, Bell SC, Sarovich DS.	Microb Genom	10.1099/mgen.0.000406	2020
Phylogeny	Genomic characterization of Achromobacter species isolates from chronic and occasional lung infection in cystic fibrosis patients.	Veschetti L, Sandri A, Patuzzo C, Melotti P, Malerba G, Lleo MM.	Microb Genom	10.1099/mgen.0.000606	2021
	Mobilome Analysis of Achromobacter spp. Isolates from Chronic and Occasional Lung Infection in Cystic Fibrosis Patients.	Veschetti L, Sandri A, Patuzzo C, Melotti P, Malerba G, Lleo MM.	Microorganisms	10.3390/microorganisms9010130	2021
	Adaptive Interactions of Achromobacter spp. with Pseudomonas aeruginosa in Cystic Fibrosis Chronic Lung Co-Infection.	Sandri A, Haagensen JAJ, Veschetti L, Johansen HK, Molin S, Malerba G, Signoretto C, Boaretti M, Lleo MM.	Pathogens	10.3390/pathogens10080978	2021
Phylogeny	Characterization of Achromobacter Species in Cystic Fibrosis Patients: Comparison of bla(OXA-114) PCR Amplification, Multilocus Sequence Typing, and Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry.	Rodrigues ER, Ferreira AG, Leao RS, Leite CC, Carvalho-Assef AP, Albano RM, Marques EA.	J Clin Microbiol	10.1128/jcm.02197-15	2015
	Gut bacterial type III secretion systems aggravate colitis in mice and serve as biomarkers of Crohn's disease.	Xu J, Li P, Li Z, Liu S, Guo H, Lesser CF, Ke J, Zhao W, Mou X.	EBioMedicine	10.1016/j.ebiom.2024.105296	2024
	Longitudinal Surveillance and Combination Antimicrobial Susceptibility Testing of Multidrug-Resistant Achromobacter Species from Cystic Fibrosis Patients.	Okoliegbe IN, Hijazi K, Cooper K, Ironside C, Gould IM.	Antimicrob Agents Chemother	10.1128/aac.01467-20	2020
	Achromobacter xylosoxidans infection in cystic fibrosis siblings with different outcomes: Case reports.	Firmida MC, Marques EA, Leao RS, Pereira RH, Rodrigues ER, Albano RM, Folescu TW, Bernardo V, Daltro P, Capone D, Lopes AJ.	Respir Med Case Rep	10.1016/j.rmcr.2017.01.005	2017
	Characterization of the Achromobacter xylosoxidans Type VI Secretion System and Its Implication in Cystic Fibrosis.	Le Goff M, Vastel M, Lebrun R, Mansuelle P, Diarra A, Grandjean T, Triponney P, Imbert G, Gosset P, Dessein R, Garnier F, Durand E.	Front Cell Infect Microbiol	10.3389/fcimb.2022.859181	2022
Genetics	A Pan-Genomic Approach to Understand the Basis of Host Adaptation in Achromobacter.	Jeukens J, Freschi L, Vincent AT, Emond-Rheault JG, Kukavica-Ibrulj I, Charette SJ, Levesque RC.	Genome Biol Evol	10.1093/gbe/evx061	2017
Enzymology	Prevalence and Outcomes of Achromobacter Species Infections in Adults with Cystic Fibrosis: a North American Cohort Study.	Edwards BD, Greysson-Wong J, Somayaji R, Waddell B, Whelan FJ, Storey DG, Rabin HR, Surette MG, Parkins MD.	J Clin Microbiol	10.1128/jcm.02556-16	2017
	Achromobacter Infections and Treatment Options.	Isler B, Kidd TJ, Stewart AG, Harris P, Paterson DL.	Antimicrob Agents Chemother	10.1128/aac.01025-20	2020
Enzymology	Pseudomonas aeruginosa and Achromobacter sp. clonal selection leads to successive waves of contamination of water in dental care units.	Abdouchakour F, Dupont C, Grau D, Aujoulat F, Mournetas P, Marchandin H, Parer S, Gibert P, Valcarcel J, Jumas-Bilak E.	Appl Environ Microbiol	10.1128/aem.01279-15	2015
Phylogeny	Achromobacter aestuarii sp. nov., Isolated from an Estuary.	Kim SC, Chung SO, Lee HJ	Curr Microbiol	10.1007/s00284-020-02231-9	2020
Phylogeny	Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively.	Vandamme P, Moore ER, Cnockaert M, Peeters C, Svensson-Stadler L, Houf K, Spilker T, LiPuma JJ	Syst Appl Microbiol	10.1016/j.syapm.2013.06.005	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#33592	Collection of Institut Pasteur ; Curators of the CIP; CIP 110711
#62833	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62421
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125150	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 115983
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Achromobacter dolens (CIP 110711, LMG 26840, CCUG 62421)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_902859745

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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