Name: Achromobacter dolens Vandamme R-47430
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134918

Type strain:

Species: Achromobacter dolens

Strain Designation: Vandamme R-47430, LiPuma AU4012

Culture col. no.: CIP 110711, LMG 26840, CCUG 62421

Strain history: CIP <- 2014, LMG <- 2012, P. Vandamme, Gent Univ., Gent, Belgium: strain Vandamme R-47430 <- 2002, J. Lipuma, Michigan Univ., Michigan, USA strain: LiPuma AU4012

NCBI tax ID(s): 1287738 (species)

SI-ID 376265

LMG 26840, CCUG 62421, CCUG 6242

Other strains from Achromobacter dolens

A. dolens CCUG 62422, LMG 26841
A. dolens CCUG 62423, LMG 26842
A. dolens CCUG 70224

Section

Achromobacter dolens Vandamme R-47430 is an aerobe, mesophilic, Gram-negative bacterium of the family Alcaligenaceae.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Achromobacter*
	Species	**Achromobacter dolens**
	Full Scientific Name (LPSN)	Achromobacter dolens Vandamme et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #33592]	Gram stain	negative

[Ref.: #33592]	Cell shape	rod-shaped

[Ref.: #33592]	Motility	yes

[Ref.: #62833]

Incubation period

1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #33592]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33592]

Culture medium growth

[Ref.: #33592]

Culture medium composition

expand / minimize

[Ref.: #33592]

Culture medium

CIP Medium 72

[Ref.: #33592]

Culture medium growth

[Ref.: #33592]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #62833]			growth	37 °C

[Ref.: #62833]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62833]

Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #62833]	Sample type/isolated from	human sputum, non-CF patient
[Ref.: #62833]	Country	USA
[Ref.: #62833]	Country ISO 3 Code	USA
[Ref.: #62833]	Continent	North America

[Ref.: #33592]	Sample type/isolated from	Human, Sputum
[Ref.: #33592]	Country	United States of America
[Ref.: #33592]	Country ISO 3 Code	USA
[Ref.: #33592]	Continent	North America
[Ref.: #33592]	Isolation date	2002

[Ref.: #33592]	Country	USA
[Ref.: #33592]	Country ISO 3 Code	USA
[Ref.: #33592]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	#Sputum
#Host	#Human	-
#Infection	#Patient	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #33592]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Achromobacter dolens LMG 26840	GCA_902859745	contig	GenBank	1287738 tax ID	*
[Ref.: #66792]	Achromobacter dolens strain LMG 26840	1287738.5	wgs	PATRIC	1287738 tax ID	*
[Ref.: #66792]	Achromobacter dolens LMG 26840	2900088174	draft	JGI IMG/M	1287738 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Achromobacter dolens strain LMG 26840 PATRIC: 1287738.5
[Ref.: #69480]	motile	yes	88.096	no
[Ref.: #69480]	gram-positive	no	98.393	no
[Ref.: #69480]	anaerobic	no	98.452	yes
[Ref.: #69480]	aerobic	yes	90.217	yes
[Ref.: #69480]	halophile	no	90.466	no
[Ref.: #69480]	spore-forming	no	94.455	no
[Ref.: #69480]	thermophile	no	99.326	yes
[Ref.: #69480]	glucose-util	yes	56.464	no
[Ref.: #69480]	flagellated	no	65.984	no
[Ref.: #69480]	glucose-ferment	no	89.621	no

Availability in culture collections External links

[Ref.: #33592]

Culture collection no.

CIP 110711, LMG 26840, CCUG 62421

[Ref.: #92352]

SI-ID 376265

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Achromobacter aestuarii sp. nov., Isolated from an Estuary.	Kim SC, Chung SO, Lee HJ	Curr Microbiol	10.1007/s00284-020-02231-9	2020	*
Phylogeny	Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively.	Vandamme P, Moore ER, Cnockaert M, Peeters C, Svensson-Stadler L, Houf K, Spilker T, LiPuma JJ	Syst Appl Microbiol	10.1016/j.syapm.2013.06.005	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33592 Collection of Institut Pasteur ; Curators of the CIP; CIP 110711
#62833 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62421

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#92352

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID376265.1 )

* These data were automatically processed and therefore are not curated

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Achromobacter dolens strain LMG 26840

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