Strain identifier
BacDive ID: 134918
Type strain: 
Species: Achromobacter dolens
Strain Designation: Vandamme R-47430, LiPuma AU4012
Strain history: CIP <- 2014, LMG <- 2012, P. Vandamme, Gent Univ., Gent, Belgium: strain Vandamme R-47430 <- 2002, J. Lipuma, Michigan Univ., Michigan, USA strain: LiPuma AU4012
NCBI tax ID(s): 1287738 (species)
version 8.1 (current version)
General
@ref: 33592
BacDive-ID: 134918
keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Achromobacter dolens Vandamme R-47430 is an aerobe, mesophilic, Gram-negative bacterium of the family Alcaligenaceae.
NCBI tax id
- NCBI tax id: 1287738
- Matching level: species
strain history
- @ref: 33592
- history: CIP <- 2014, LMG <- 2012, P. Vandamme, Gent Univ., Gent, Belgium: strain Vandamme R-47430 <- 2002, J. Lipuma, Michigan Univ., Michigan, USA strain: LiPuma AU4012
doi: 10.13145/bacdive134918.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Achromobacter
- species: Achromobacter dolens
- full scientific name: Achromobacter dolens Vandamme et al. 2014
@ref: 33592
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Achromobacter
species: Achromobacter dolens
strain designation: Vandamme R-47430, LiPuma AU4012
type strain: yes
Morphology
cell morphology
- @ref: 33592
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
colony morphology
- @ref: 62833
- incubation period: 1 day
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 33592 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
| 33592 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
- @ref: 62833
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 62833
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | country | origin.country | continent | sample type | isolation date |
|---|---|---|---|---|---|
| 33592 | USA | USA | North America | ||
| 62833 | USA | USA | North America | human sputum, non-CF patient | |
| 33592 | United States of America | USA | North America | Human, Sputum | 2002 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Fluids | #Sputum |
| #Host | #Human | |
| #Infection | #Patient |
Safety information
risk assessment
- @ref: 33592
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Achromobacter dolens LMG 26840 | GCA_902859745 | contig | ncbi | 1287738 |
| 66792 | Achromobacter dolens strain LMG 26840 | 1287738.5 | wgs | patric | 1287738 |
| 66792 | Achromobacter dolens LMG 26840 | 2900088174 | draft | img | 1287738 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 88.096 | no |
| gram-positive | no | 98.393 | no |
| anaerobic | no | 98.452 | yes |
| aerobic | yes | 90.217 | yes |
| halophile | no | 90.466 | no |
| spore-forming | no | 94.455 | no |
| thermophile | no | 99.326 | yes |
| glucose-util | yes | 56.464 | no |
| flagellated | no | 65.984 | no |
| glucose-ferment | no | 89.621 | no |
External links
@ref: 33592
culture collection no.: CIP 110711, LMG 26840, CCUG 62421
straininfo link
- @ref: 92352
- straininfo: 376265
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23891345 | Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively. | Vandamme P, Moore ER, Cnockaert M, Peeters C, Svensson-Stadler L, Houf K, Spilker T, LiPuma JJ | Syst Appl Microbiol | 10.1016/j.syapm.2013.06.005 | 2013 | Achromobacter/chemistry/*classification/genetics/physiology, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Genotype, Molecular Sequence Data, Multilocus Sequence Typing, Phylogeny | Genetics |
| Phylogeny | 33033853 | Achromobacter aestuarii sp. nov., Isolated from an Estuary. | Kim SC, Chung SO, Lee HJ | Curr Microbiol | 10.1007/s00284-020-02231-9 | 2020 | *Achromobacter, Bacterial Typing Techniques, DNA, Bacterial/genetics, *Estuaries, Fatty Acids/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 33592 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110711 | Collection of Institut Pasteur (CIP 110711) | |
| 62833 | Curators of the CCUG | https://www.ccug.se/strain?id=62421 | Culture Collection University of Gothenburg (CCUG) (CCUG 62421) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 92352 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID376265.1 |