Paenibacillus siamensis (KCTC 13038, PCU 279, TISTR 1831)

Name: Paenibacillus siamensis (KCTC 13038, PCU 279, TISTR 1831)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134373

Type strain

Strain Designation S5-3

Culture col. no. KCTC 13038 PCU 279 TISTR 1831 S5-3

NCBI tax ID(s) 429340

Special Collections KCTC Literature strains

Links

Paenibacillus siamensis S5-3 is a facultative anaerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

spore-forming Gram-positive motile rod-shaped facultative anaerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 285761

KCTC 13038

@ref 20215

Last LPSN update 2026-02-09 11:32:10

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus siamensis

Full scientific name Paenibacillus siamensis Khianngam et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32653	positive	7.5 µm	0.65 µm	rod-shaped

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
32653	positive	growth	15-50
32653	positive	optimum	32.5

Culture pH

@ref	Ability	Type	PH	PH range
32653	positive	optimum	8
32653	positive	growth	07-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

32653

Oxygen tolerancefacultative anaerobe

Spore formation

32653

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32653	NaCl	positive	growth	03-05 %
32653	NaCl	positive	optimum	4 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32653	22599 ChEBI	arabinose	+	carbon source
32653	17057 ChEBI	cellobiose	+	carbon source
32653	4853 ChEBI	esculin	+	hydrolysis
32653	28260 ChEBI	galactose	+	carbon source
32653	28087 ChEBI	glycogen	+	carbon source
32653	17716 ChEBI	lactose	+	carbon source
32653	17306 ChEBI	maltose	+	carbon source
32653	29864 ChEBI	mannitol	+	carbon source
32653	28053 ChEBI	melibiose	+	carbon source
32653	16634 ChEBI	raffinose	+	carbon source
32653	26546 ChEBI	rhamnose	+	carbon source
32653	33942 ChEBI	ribose	+	carbon source
32653	17814 ChEBI	salicin	+	carbon source
32653	17992 ChEBI	sucrose	+	carbon source
32653	27082 ChEBI	trehalose	+	carbon source
32653	53426 ChEBI	tween 80	+	carbon source
32653	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32653	catalase	+	1.11.1.6
32653	cytochrome oxidase	+	1.9.3.1
32653	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

32653

Sample typesoil

Taxonmaps

69479

Global distribution of 16S sequence AB295645 (>99% sequence identity) for Paenibacillus siamensis subclade from Microbeatlas

Aquatic Samples
Soil Samples	6
Animal Samples	3
Plant Samples	4
Total Samples	13

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
32653	Paenibacillus siamensis gene for 16S rRNA, partial sequence	AB295645	1464	429340
124043	Paenibacillus siamensis strain PCU 279 16S ribosomal RNA gene, partial sequence.	MT758144	762	429340
124043	Paenibacillus siamensis strain PCU 279 16S ribosomal RNA gene, partial sequence.	MT760011	762	429340

GC content

32653

GC-content (mol%)45.8

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus siamensis sp. nov., Paenibacillus septentrionalis sp. nov. and Paenibacillus montaniterrae sp. nov., xylanase-producing bacteria from Thai soils.	Khianngam S, Tanasupawat S, Lee JS, Lee KC, Akaracharanya A	Int J Syst Evol Microbiol	10.1099/ijs.0.65851-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28864	IJSEM 130 2009 ( DOI 10.1099/ijs.0.65851-0 , PubMed 19126736 )
#32653	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28864
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus siamensis (KCTC 13038, PCU 279, TISTR 1831)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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