Name: Paenibacillus siamensis S5-3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134373

Type strain:

Species: Paenibacillus siamensis

Strain Designation: S5-3

Culture col. no.: KCTC 13038, PCU 279, TISTR 1831

NCBI tax ID(s): 429340 (species)

Special Collections

Section

Paenibacillus siamensis S5-3 is a facultative anaerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

Gram-positive
motile
rod-shaped
spore-forming
facultative anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus siamensis**
	Full Scientific Name (LPSN)	Paenibacillus siamensis Khianngam et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #32653]	Gram stain	positive

[Ref.: #32653]	Cell length	7.5 µm

[Ref.: #32653]	Cell width	0.65 µm

[Ref.: #32653]	Cell shape	rod-shaped

[Ref.: #32653]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #32653]			growth	15-50 °C
[Ref.: #32653]			optimum	32.5 °C

	pH	Kind of pH		pH
[Ref.: #32653]			optimum	8
[Ref.: #32653]			growth	07-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32653]

Oxygen tolerance

facultative anaerobe

[Ref.: #32653]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32653]		NaCl		growth	03-05	%
[Ref.: #32653]		NaCl		optimum	4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32653]	arabinose ChEBI	+	carbon source
[Ref.: #32653]	cellobiose ChEBI	+	carbon source
[Ref.: #32653]	esculin ChEBI	+	hydrolysis
[Ref.: #32653]	galactose ChEBI	+	carbon source
[Ref.: #32653]	glycogen ChEBI	+	carbon source
[Ref.: #32653]	lactose ChEBI	+	carbon source
[Ref.: #32653]	maltose ChEBI	+	carbon source
[Ref.: #32653]	mannitol ChEBI	+	carbon source
[Ref.: #32653]	melibiose ChEBI	+	carbon source
[Ref.: #32653]	raffinose ChEBI	+	carbon source
[Ref.: #32653]	rhamnose ChEBI	+	carbon source
[Ref.: #32653]	ribose ChEBI	+	carbon source
[Ref.: #32653]	salicin ChEBI	+	carbon source
[Ref.: #32653]	sucrose ChEBI	+	carbon source
[Ref.: #32653]	trehalose ChEBI	+	carbon source
[Ref.: #32653]	tween 80 ChEBI	+	carbon source
[Ref.: #32653]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32653]	catalase	+	1.11.1.6
[Ref.: #32653]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32653]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32653]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB295645 (>99% sequence identity) for Paenibacillus siamensis subclade from Microbeatlas

Aquatic Samples
Soil Samples	6
Animal Samples	3
Plant Samples	4
Total Samples	13

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32653]	Paenibacillus siamensis gene for 16S rRNA, partial sequence	AB295645	1464	GenBank ENA	429340 tax ID

[Ref.: #32653]

GC-content

45.8 mol%

Availability in culture collections External links

[Ref.: #32653]

Culture collection no.

KCTC 13038, PCU 279, TISTR 1831

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus siamensis sp. nov., Paenibacillus septentrionalis sp. nov. and Paenibacillus montaniterrae sp. nov., xylanase-producing bacteria from Thai soils.	Khianngam S, Tanasupawat S, Lee JS, Lee KC, Akaracharanya A	Int J Syst Evol Microbiol	10.1099/ijs.0.65851-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32653

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28864 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#28864

IJSEM 130 2009 ( DOI 10.1099/ijs.0.65851-0 , PubMed 19126736 )

* These data were automatically processed and therefore are not curated

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