Strain identifier
BacDive ID: 134373
Type strain:
Species: Paenibacillus siamensis
Strain Designation: S5-3
NCBI tax ID(s): 429340 (species)
version 8.1 (current version)
General
@ref: 32653
BacDive-ID: 134373
keywords: 16S sequence, Bacteria, facultative anaerobe, spore-forming, Gram-positive, motile, rod-shaped
description: Paenibacillus siamensis S5-3 is a facultative anaerobe, spore-forming, Gram-positive bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 429340
- Matching level: species
doi: 10.13145/bacdive134373.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus siamensis
- full scientific name: Paenibacillus siamensis Khianngam et al. 2009
@ref: 32653
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus siamensis
strain designation: S5-3
type strain: yes
Morphology
cell morphology
- @ref: 32653
- gram stain: positive
- cell length: 7.5 µm
- cell width: 0.65 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
32653 | positive | growth | 15-50 | |
32653 | positive | optimum | 32.5 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
32653 | positive | growth | 07-09 | alkaliphile |
32653 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
- @ref: 32653
- oxygen tolerance: facultative anaerobe
spore formation
- @ref: 32653
- spore formation: yes
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
32653 | NaCl | positive | growth | 03-05 % |
32653 | NaCl | positive | optimum | 4 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
32653 | 22599 | arabinose | + | carbon source |
32653 | 17057 | cellobiose | + | carbon source |
32653 | 28260 | galactose | + | carbon source |
32653 | 28087 | glycogen | + | carbon source |
32653 | 17716 | lactose | + | carbon source |
32653 | 17306 | maltose | + | carbon source |
32653 | 29864 | mannitol | + | carbon source |
32653 | 28053 | melibiose | + | carbon source |
32653 | 16634 | raffinose | + | carbon source |
32653 | 26546 | rhamnose | + | carbon source |
32653 | 33942 | ribose | + | carbon source |
32653 | 17814 | salicin | + | carbon source |
32653 | 17992 | sucrose | + | carbon source |
32653 | 27082 | trehalose | + | carbon source |
32653 | 53426 | tween 80 | + | carbon source |
32653 | 18222 | xylose | + | carbon source |
32653 | 4853 | esculin | + | hydrolysis |
enzymes
@ref | value | activity | ec |
---|---|---|---|
32653 | catalase | + | 1.11.1.6 |
32653 | cytochrome oxidase | + | 1.9.3.1 |
32653 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 32653
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_91170.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_5815;97_45488;98_62842;99_91170&stattab=map
- Last taxonomy: Paenibacillus siamensis subclade
- 16S sequence: AB295645
- Sequence Identity:
- Total samples: 13
- soil counts: 6
- animal counts: 3
- plant counts: 4
Sequence information
16S sequences
- @ref: 32653
- description: Paenibacillus siamensis gene for 16S rRNA, partial sequence
- accession: AB295645
- length: 1464
- database: nuccore
- NCBI tax ID: 429340
GC content
- @ref: 32653
- GC-content: 45.8
External links
@ref: 32653
culture collection no.: KCTC 13038, PCU 279, TISTR 1831
literature
- topic: Phylogeny
- Pubmed-ID: 19126736
- title: Paenibacillus siamensis sp. nov., Paenibacillus septentrionalis sp. nov. and Paenibacillus montaniterrae sp. nov., xylanase-producing bacteria from Thai soils.
- authors: Khianngam S, Tanasupawat S, Lee JS, Lee KC, Akaracharanya A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65851-0
- year: 2009
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Gram-Positive Endospore-Forming Rods/*classification/*enzymology/genetics/isolation & purification, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, Thailand, Xylosidases/*biosynthesis
- topic2: Enzymology
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
32653 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28864 | 28776041 |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |