Name: Mesorhizobium caraganae LMG 24397
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134371

Type strain:

Species: Mesorhizobium caraganae

Culture col. no.: LMG 24397, HAMBI 29990, CCBAU 11299

NCBI tax ID(s): 483206 (species)

SI-ID 360142

HAMBI 2990, LMG 24397

Section

Mesorhizobium caraganae LMG 24397 is an aerobe, Gram-negative, motile bacterium that was isolated from root nodules.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Mesorhizobium*
	Species	**Mesorhizobium caraganae**
	Full Scientific Name (LPSN)	Mesorhizobium caraganae Guan et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32640]	Gram stain	negative

[Ref.: #32640]	Cell length	02-03 µm

[Ref.: #32640]	Cell width	0.5 µm

[Ref.: #32640]	Cell shape	rod-shaped

[Ref.: #32640]	Motility	yes

[Ref.: #32640]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #32640]			growth	28-40 °C
[Ref.: #32640]			optimum	28 °C

[Ref.: #32640]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #32640]			optimum	7
[Ref.: #32640]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32640]

Oxygen tolerance

aerobe

[Ref.: #32640]

Ability of spore formation

[Ref.: #32640]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32640]	galactose ChEBI	+	carbon source
[Ref.: #32640]	glucose ChEBI	+	carbon source
[Ref.: #32640]	mannose ChEBI	+	carbon source
[Ref.: #32640]	sucrose ChEBI	+	carbon source
[Ref.: #32640]	trehalose ChEBI	+	carbon source
[Ref.: #32640]	xylose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32640]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32640]	Sample type/isolated from	root nodules
* marker position based on {}

Isolation sources categories

#Host	#Plants	-
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF149003 (>99% sequence identity) for Mesorhizobium from Microbeatlas

Aquatic Samples	507
Soil Samples	2635
Animal Samples	282
Plant Samples	1035
Total Samples	4459

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32640]	Mesorhizobium caraganae strain CCBAU 11299 16S ribosomal RNA gene, partial sequence	EF149003	1365	GenBank	483206 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mesorhizobium caraganae LMG 24397	GCA_016836705	contig	GenBank	483206 tax ID	*
[Ref.: #66792]	Mesorhizobium caraganae strain LMG 24397	483206.4	wgs	PATRIC	483206 tax ID	*

[Ref.: #32640]

GC-content

59.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mesorhizobium caraganae strain LMG 24397 PATRIC: 483206.4
[Ref.: #69480]	gram-positive	no	97.685	no
[Ref.: #69480]	anaerobic	no	98.929	yes
[Ref.: #69480]	halophile	no	94.113	no
[Ref.: #69480]	spore-forming	no	94.171	yes
[Ref.: #69480]	glucose-util	yes	90.784	no
[Ref.: #69480]	aerobic	yes	91.775	yes
[Ref.: #69480]	thermophile	no	99.116	yes
[Ref.: #69480]	motile	yes	86.438	yes
[Ref.: #69480]	flagellated	no	85.653	no
[Ref.: #69480]	glucose-ferment	no	91.246	no

Availability in culture collections External links

[Ref.: #32640]

Culture collection no.

LMG 24397, HAMBI 29990, CCBAU 11299

[Ref.: #91914]

SI-ID 360142

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mesorhizobium helmanticense sp. nov., isolated from Lotus corniculatus nodules.	Marcos-Garcia M, Menendez E, Ramirez-Bahena MH, Mateos PF, Peix A, Velazquez E, Rivas R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001942	2017	*
Phylogeny	Mesorhizobium caraganae sp. nov., a novel rhizobial species nodulated with Caragana spp. in China.	Guan SH, Chen WF, Wang ET, Lu YL, Yan XR, Zhang XX, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.65829-0	2008	*
Phylogeny	Definition of the novel symbiovar canariense within Mesorhizobium neociceri sp. nov., a new species of genus Mesorhizobium nodulating Cicer canariense in the "Caldera de Taburiente" National Park (La Palma, Canary Islands).	Leon-Barrios M, Flores-Felix JD, Perez-Yepez J, Ramirez-Bahena MH, Pulido-Suarez L, Igual JM, Velazquez E, Peix A	Syst Appl Microbiol	10.1016/j.syapm.2021.126237	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32640

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28851 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91914

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID360142.1 )

#28851

IJSEM 2646 2008 ( DOI 10.1099/ijs.0.65829-0 , PubMed 18984708 )

* These data were automatically processed and therefore are not curated

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Mesorhizobium caraganae strain LMG 24397

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