Name: Paenochrobactrum glaciei Pi26
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134370

Type strain:

Species: Paenochrobactrum glaciei

Strain Designation: Pi26

Culture col. no.: KMM 3858, NRIC 0733, JCM 15115

Strain history: N. Tanaka <-- KMM 3858 (=Pi 26).

NCBI tax ID(s): 486407 (species)

Section

Paenochrobactrum glaciei Pi26 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from sea-ice sample.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Brucellaceae*
	Genus	*Paenochrobactrum*
	Species	**Paenochrobactrum glaciei**
	Full Scientific Name (LPSN)	Paenochrobactrum glaciei (Romanenko et al. 2008) Kämpfer et al. 2010

Synonym

Pseudochrobactrum glaciei

Information on morphological and physiological properties Morphology

[Ref.: #32639]	Gram stain	negative

[Ref.: #32639]	Cell length	2 µm

[Ref.: #32639]	Cell shape	rod-shaped

[Ref.: #32639]	Motility	no

[Ref.: #32639]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32639]	growth	05-40 °C
[Ref.: #32639]	optimum	28-30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #32639]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32639]			optimum	6.5-8
[Ref.: #32639]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32639]

Oxygen tolerance

aerobe

[Ref.: #32639]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32639]		NaCl		growth	0-6	%
[Ref.: #32639]		NaCl		optimum	0-6	%

[Ref.: #32639]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32639]	gluconate ChEBI	+	carbon source
[Ref.: #32639]	histidine ChEBI	+	carbon source
[Ref.: #32639]	mannitol ChEBI	+	carbon source
[Ref.: #32639]	phenylacetate ChEBI	+	carbon source
[Ref.: #32639]	propionate ChEBI	+	carbon source
[Ref.: #32639]	ribose ChEBI	+	carbon source
[Ref.: #32639]	sorbitol ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32639]		catalase	+	1.11.1.6
[Ref.: #32639]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32639]	Sample type/isolated from	sea-ice sample

[Ref.: #67770]	Sample type/isolated from	Sea-ice sample collected from Peter the Great Bay of the Sea of Japan
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Ice
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB369864 (>99% sequence identity) for Paenochrobactrum from Microbeatlas

Aquatic Samples	10
Soil Samples	4
Animal Samples	14
Plant Samples	9
Total Samples	37

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32639]	Pseudochrobactrum glaciei gene for 16S ribosomal RNA, partial sequence	AB369864	1477	GenBank	486407 tax ID

Availability in culture collections External links

[Ref.: #32639]

Culture collection no.

KMM 3858, NRIC 0733, JCM 15115

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenochrobactrum pullorum sp. nov. isolated from a chicken.	Kampfer P, Poppel MT, Wilharm G, Glaeser SP, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.061101-0	2014	*
Phylogeny	Paenochrobactrum gallinarii gen. nov., sp. nov., isolated from air of a duck barn, and reclassification of Pseudochrobactrum glaciei as Paenochrobactrum glaciei comb. nov.	Kampfer P, Martin E, Lodders N, Jackel U, Huber BE, Schumann P, Langer S, Busse HJ, Scholz H	Int J Syst Evol Microbiol	10.1099/ijs.0.015842-0	2009	*
Phylogeny	Pseudochrobactrum glaciei sp. nov., isolated from sea ice collected from Peter the Great Bay of the Sea of Japan.	Romanenko LA, Tanaka N, Frolova GM, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.65828-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32639

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28850 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#28850

IJSEM 2454 2008 ( DOI 10.1099/ijs.0.65828-0 , PubMed 18842874 )

* These data were automatically processed and therefore are not curated

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