Kineococcus gynurae (TISTR 1856, NRRL B-24568, BCC 26245)

Name: Kineococcus gynurae (TISTR 1856, NRRL B-24568, BCC 26245)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134344

Type strain

Strain Designation KKD096

Culture col. no. TISTR 1856 NRRL B-24568 BCC 26245 NBRC 103943 KKD096 2 more

NCBI tax ID(s) 452979

Special Collections JCM Literature strains

History JCM <-- TISTR 1856 <-- K. Duangmal KKD096.

Links

Kineococcus gynurae KKD096 is an aerobe, Gram-positive, motile bacterium that was isolated from plant roots.

Gram-positive motile coccus-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132713

JCM 15972,NBRC 103943

@ref 20215

Last LPSN update 2026-05-29 08:38:18

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kineosporiales

Family Kineosporiaceae

Genus Kineococcus

Species Kineococcus gynurae

Full scientific name Kineococcus gynurae Duangmal et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
32549	positive	coccus-shaped
125439	positive			99.526

Pigmentation

32549

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
32549	positive	growth	14-34
32549	positive	optimum	25-28
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
32549	positive	optimum	06-07
32549	positive	growth	05-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32549	aerobe
125439	obligate aerobe	99.16

Spore formation

32549

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32549	NaCl	positive	growth	01-07 %
32549	NaCl	positive	optimum	01-05 %

Observation

@ref	Observation
32549	aggregates in chains
67770	quinones: MK-9(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32549	28757 ChEBI	fructose	+	carbon source
32549	28260 ChEBI	galactose	+	carbon source
32549	17234 ChEBI	glucose	+	carbon source
32549	18403 ChEBI	L-arabitol	+	carbon source
32549	17716 ChEBI	lactose	+	carbon source
32549	17306 ChEBI	maltose	+	carbon source
32549	29864 ChEBI	mannitol	+	carbon source
32549	37684 ChEBI	mannose	+	carbon source
32549	28053 ChEBI	melibiose	+	carbon source
32549	26546 ChEBI	rhamnose	+	carbon source
32549	30911 ChEBI	sorbitol	+	carbon source
32549	17992 ChEBI	sucrose	+	carbon source
32549	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32549	catalase	+	1.11.1.6
32549	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	-
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
32549	plant roots
67770	Roots of Gynura pseudochina var. hispida from Bangkok	Gynura pseudochina var. hispida	Thailand	THA	Asia

Taxonmaps

69479

Global distribution of 16S sequence EF667339 (>99% sequence identity) for Kineococcus gynurae subclade from Microbeatlas

Aquatic Samples	94
Soil Samples	127
Animal Samples	398
Plant Samples	120
Total Samples	739

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4243124v1 assembly for Kineococcus gynurae TISTR 1856	scaffold	GCA_042431245	452979	75.12
124043	ASM5087131v1 assembly for Kineococcus gynurae NBRC 103943	contig	GCA_050871315	452979	68.76

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
32549	Kineococcus sp. KKD096 16S ribosomal RNA gene, partial sequence	EF667339	1351	452979
124043	Kineococcus gynurae gene for 16S rRNA, partial sequence.	AB522099	1473	452979
124043	Kineococcus gynurae strain TISTR 1856 16S ribosomal RNA gene, partial sequence.	MT760660	1365	452979
124043	Kineococcus gynurae strain NBRC 103943 16S ribosomal RNA gene, partial sequence.	PQ643263	1514	452979

GC content

@ref	GC-content (mol%)	Method
32549	73.3
67770	73.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4243124v1 assembly for Kineococcus gynurae TISTR 1856
NCBI: GCA_042431245

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.16	no
125439	gram_stain	BacteriaNetⓘ	positive	99.53	no
125439	spore_formation	BacteriaNetⓘ	yes	55.66	no
125439	motility	BacteriaNetⓘ	no	89.43	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Kineococcus vitellinus sp. nov., Kineococcus indalonis sp. nov. and Kineococcus siccus sp. nov., Isolated Nearby the Tabernas Desert (Almería, Spain).	Molina-Menor E, Gimeno-Valero H, Pascual J, Pereto J, Porcar M.	Microorganisms	10.3390/microorganisms8101547	2020
Phylogeny	Kineococcus endophytica sp. nov., a novel endophytic actinomycete isolated from a coastal halophyte in Jiangsu, China.	Bian GK, Feng ZZ, Qin S, Xing K, Wang Z, Cao CL, Liu CH, Dai CC, Jiang JH	Antonie Van Leeuwenhoek	10.1007/s10482-012-9757-4	2012
Phylogeny	Kineococcus gynurae sp. nov., isolated from a Thai medicinal plant.	Duangmal K, Thamchaipenet A, Ara I, Matsumoto A, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.65671-0	2008

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28767	IJSEM 2439 2008 ( DOI 10.1099/ijs.0.65671-0 , PubMed 18842871 )
#32549	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28767
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Kineococcus gynurae (TISTR 1856, NRRL B-24568, BCC 26245)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042431245

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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