Name: Kineococcus gynurae KKD096
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134344

Type strain:

Species: Kineococcus gynurae

Strain Designation: KKD096

Culture col. no.: TISTR 1856, NRRL B-24568, BCC 26245, NBRC 103943, JCM 15972, KACC 14421

Strain history: TISTR 1856 <-- K. Duangmal KKD096.

NCBI tax ID(s): 452979 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Kineococcus gynurae KKD096 is an aerobe, Gram-positive, motile bacterium that was isolated from plant roots.

coccus-shaped
Gram-positive
motile
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kineosporiales*
	Family	*Kineosporiaceae*
	Genus	*Kineococcus*
	Species	**Kineococcus gynurae**
	Full Scientific Name (LPSN)	Kineococcus gynurae Duangmal et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32549]	Gram stain	positive

[Ref.: #32549]	Cell shape	coccus-shaped

[Ref.: #32549]	Motility	yes

[Ref.: #32549]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32549]	growth	14-34 °C
[Ref.: #32549]	optimum	25-28 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #32549]			optimum	06-07
[Ref.: #32549]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32549]

Oxygen tolerance

aerobe

[Ref.: #32549]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32549]		NaCl		growth	01-07	%
[Ref.: #32549]		NaCl		optimum	01-05	%

[Ref.: #32549]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32549]	fructose ChEBI	+	carbon source
[Ref.: #32549]	galactose ChEBI	+	carbon source
[Ref.: #32549]	glucose ChEBI	+	carbon source
[Ref.: #32549]	L-arabitol ChEBI	+	carbon source
[Ref.: #32549]	lactose ChEBI	+	carbon source
[Ref.: #32549]	maltose ChEBI	+	carbon source
[Ref.: #32549]	mannitol ChEBI	+	carbon source
[Ref.: #32549]	mannose ChEBI	+	carbon source
[Ref.: #32549]	melibiose ChEBI	+	carbon source
[Ref.: #32549]	rhamnose ChEBI	+	carbon source
[Ref.: #32549]	sorbitol ChEBI	+	carbon source
[Ref.: #32549]	sucrose ChEBI	+	carbon source
[Ref.: #32549]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32549]		catalase	+	1.11.1.6
[Ref.: #32549]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32549]	Sample type/isolated from	plant roots

[Ref.: #67770]	Sample type/isolated from	Roots of Gynura pseudochina var. hispida from Bangkok
[Ref.: #67770]	Host species	Gynura pseudochina var. hispida
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	-
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF667339 (>99% sequence identity) for Kineococcus gynurae subclade from Microbeatlas

Aquatic Samples	94
Soil Samples	127
Animal Samples	398
Plant Samples	120
Total Samples	739

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32549]	Kineococcus sp. KKD096 16S ribosomal RNA gene, partial sequence	EF667339	1351	GenBank ENA	452979 tax ID
[Ref.: #124043]	Kineococcus gynurae gene for 16S rRNA, partial sequence.	AB522099	1473	GenBank ENA	452979 tax ID	*

[Ref.: #32549]	GC-content	73.3 mol%
[Ref.: #67770]	GC-content	73.3 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #32549]

Culture collection no.

TISTR 1856, NRRL B-24568, BCC 26245, NBRC 103943, JCM 15972, KACC 14421

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kineococcus endophytica sp. nov., a novel endophytic actinomycete isolated from a coastal halophyte in Jiangsu, China.	Bian GK, Feng ZZ, Qin S, Xing K, Wang Z, Cao CL, Liu CH, Dai CC, Jiang JH	Antonie Van Leeuwenhoek	10.1007/s10482-012-9757-4	2012	*
Phylogeny	Kineococcus gynurae sp. nov., isolated from a Thai medicinal plant.	Duangmal K, Thamchaipenet A, Ara I, Matsumoto A, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.65671-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32549

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28767 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#28767

IJSEM 2439 2008 ( DOI 10.1099/ijs.0.65671-0 , PubMed 18842871 )

* These data were automatically processed and therefore are not curated

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