Name: Pontibacter korlensis X14-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134343

Type strain:

Species: Pontibacter korlensis

Strain Designation: X14-1

Culture col. no.: CCTCC AB 206081, NRRL B-51097, CIP 110462, NRRL B-51997

Strain history: CIP <- 2012, CCTCC

NCBI tax ID(s): 400092 (species)

Section

Pontibacter korlensis X14-1 is a Gram-negative, motile, rod-shaped bacterium that was isolated from Sand.

Gram-negative
motile
rod-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Pontibacter*
	Species	**Pontibacter korlensis**
	Full Scientific Name (LPSN)	Pontibacter korlensis Zhang et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32547]	Gram stain	negative
[Ref.: #120493]	Gram stain	negative

[Ref.: #32547]	Cell length	2.4 µm

[Ref.: #32547]	Cell width	0.65 µm

[Ref.: #32547]	Cell shape	rod-shaped
[Ref.: #120493]	Cell shape	rod-shaped

[Ref.: #32547]	Motility	yes
[Ref.: #120493]	Motility	no

[Ref.: #32547]	Flagellum arrangement	gliding

[Ref.: #32547]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #120493]

Culture medium

CIP Medium 72

[Ref.: #120493]

Culture medium growth

[Ref.: #120493]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #32547]			growth	07-45 °C
[Ref.: #32547]			optimum	33.5 °C

[Ref.: #32547]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #32547]			optimum	7.5
[Ref.: #32547]			growth	5.5-11

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32547]		NaCl		growth	0-8	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32547]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #32547]	acetate ChEBI	+	carbon source
[Ref.: #32547]	alanine ChEBI	+	carbon source
[Ref.: #32547]	arabinose ChEBI	+	carbon source
[Ref.: #32547]	asparagine ChEBI	+	carbon source
[Ref.: #32547]	aspartate ChEBI	+	carbon source
[Ref.: #32547]	cellobiose ChEBI	+	carbon source
[Ref.: #32547]	dextrin ChEBI	+	carbon source
[Ref.: #32547]	esculin ChEBI	+	hydrolysis
[Ref.: #32547]	fructose ChEBI	+	carbon source
[Ref.: #32547]	galactose ChEBI	+	carbon source
[Ref.: #32547]	glucose ChEBI	+	carbon source
[Ref.: #32547]	glutamate ChEBI	+	carbon source
[Ref.: #32547]	glycogen ChEBI	+	carbon source
[Ref.: #32547]	L-alaninamide ChEBI	+	carbon source
[Ref.: #32547]	lactate ChEBI	+	carbon source
[Ref.: #32547]	lactose ChEBI	+	carbon source
[Ref.: #32547]	maltose ChEBI	+	carbon source
[Ref.: #32547]	mannose ChEBI	+	carbon source
[Ref.: #32547]	melibiose ChEBI	+	carbon source
[Ref.: #32547]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #32547]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32547]	raffinose ChEBI	+	carbon source
[Ref.: #32547]	succinate ChEBI	+	carbon source
[Ref.: #32547]	sucrose ChEBI	+	carbon source
[Ref.: #32547]	trehalose ChEBI	+	carbon source
[Ref.: #32547]	urocanic acid ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32547]	acid phosphatase	+	3.1.3.2
[Ref.: #32547]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32547]	alpha-galactosidase	+	3.2.1.22
[Ref.: #32547]	catalase	+	1.11.1.6
[Ref.: #32547]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32547]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32547]	Sample type/isolated from	Sand

[Ref.: #120493]	Sample type/isolated from	Environment, Sand sample
[Ref.: #120493]	Geographic location (country and/or sea, region)	Desert of Xinjiang
[Ref.: #120493]	Country	China
[Ref.: #120493]	Country ISO 3 Code	CHN
[Ref.: #120493]	Continent	Asia
[Ref.: #120493]	Isolation date	2007
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sandy

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ888330 (>99% sequence identity) for Pontibacter korlensis from Microbeatlas

Aquatic Samples	58
Soil Samples	81
Animal Samples	51
Plant Samples	13
Total Samples	203

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #120493]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32547]	Pontibacter korlensis strain X14-1 16S ribosomal RNA gene, partial sequence	DQ888330	1435	GenBank	400092 tax ID

[Ref.: #32547]

GC-content

48.2 mol%

Availability in culture collections External links

[Ref.: #32547]

Culture collection no.

CCTCC AB 206081, NRRL B-51097, CIP 110462, NRRL B-51997

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pontibacter oryzae sp. nov., a carotenoid-producing species isolated from a rice paddy field.	Chhetri G, Kim J, Kim H, Kim I, Seo T	Antonie Van Leeuwenhoek	10.1007/s10482-019-01298-0	2019	*
Phylogeny	Erythrobacter odishensis sp. nov. and Pontibacter odishensis sp. nov. isolated from dry soil of a solar saltern.	Subhash Y, Tushar L, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.052183-0	2013	*
Phylogeny	Pontibacter korlensis sp. nov., isolated from the desert of Xinjiang, China.	Zhang L, Zhang Q, Luo X, Tang Y, Dai J, Li Y, Wang Y, Chen G, Fang C	Int J Syst Evol Microbiol	10.1099/ijs.0.65667-0	2008	*
Phylogeny	Pontibacter cellulosilyticus sp. nov., a carboxymethyl cellulose-hydrolysing bacterium isolated from coastal water.	Kang M, Chhetri G, Kim J, Kim I, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.005058	2021	*
Phylogeny	Pontibacter mangrovi sp. nov., isolated from mangrove sediment.	Mo KL, Wang L, Wu QJ, Ye L, Liu XD, Hu YH, Huang HQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004280	2020	*
Phylogeny	Pontibacter terrae sp. nov., isolated from soil.	Kim DU, Kim JY, Jang JH, Kim MK	Int J Syst Evol Microbiol	10.1099/ijsem.0.002964	2018	*
Phylogeny	Pontibacter aurantiacus sp. nov. isolated from hexachlorocyclohexane (HCH) contaminated soil.	Singh P, Kumari R, Nayyar N, Lal R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001833	2017	*
Genetics	Unraveling adaptation of Pontibacter korlensis to radiation and infertility in desert through complete genome and comparative transcriptomic analysis.	Dai J, Dai W, Qiu C, Yang Z, Zhang Y, Zhou M, Zhang L, Fang C, Gao Q, Yang Q, Li X, Wang Z, Wang Z, Jia Z, Chen X	Sci Rep	10.1038/srep10929	2015	*
Phylogeny	Pontibacter chinhatensis sp. nov., isolated from pond sediment containing discarded hexachlorocyclohexane isomer waste.	Singh AK, Garg N, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.000241	2015	*
Phylogeny	Pontibacter rhizosphera sp. nov., isolated from rhizosphere soil of an Indian medicinal plant Nerium indicum.	Raichand R, Kaur I, Singh NK, Mayilraj S	Antonie Van Leeuwenhoek	10.1007/s10482-011-9573-2	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32547

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28765 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#120493 Collection of Institut Pasteur ; Curators of the CIP; CIP 110462

#28765

IJSEM 1210 2008 ( DOI 10.1099/ijs.0.65667-0 , PubMed 18450715 )

* These data were automatically processed and therefore are not curated

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