Pontibacter korlensis (CCTCC AB 206081, NRRL B-51097, X14-1)

Name: Pontibacter korlensis (CCTCC AB 206081, NRRL B-51097, X14-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134343

Type strain

Strain Designation X14-1

Culture col. no. CCTCC AB 206081 NRRL B-51097 X14-1 CIP 110462 NRRL B-51997

NCBI tax ID(s) 400092

Special Collections Literature strains CIP

History CIP <- 2012, CCTCC

Links

Pontibacter korlensis X14-1 is a Gram-negative, motile, rod-shaped bacterium that was isolated from Sand.

Gram-negative motile rod-shaped 16S sequence Bacteria

Name and taxonomic classification

SI-ID 413202

CIP 110462

@ref 20215

Last LPSN update 2026-05-29 08:38:18

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Hymenobacteraceae

Genus Pontibacter

Species Pontibacter korlensis

Full scientific name Pontibacter korlensis Zhang et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
32547	negative	2.4 µm	0.65 µm	rod-shaped		gliding
120493	negative			rod-shaped

Pigmentation

32547

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link
120493	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
32547	positive	growth	07-45
32547	positive	optimum	33.5

Culture pH

@ref	Ability	Type	PH	PH range
32547	positive	optimum	7.5
32547	positive	growth	5.5-11	alkaliphile

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32547	NaCl	positive	growth	0-8 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32547	28644 ChEBI	2-oxopentanoate	+	carbon source
32547	30089 ChEBI	acetate	+	carbon source
32547	16449 ChEBI	alanine	+	carbon source
32547	22599 ChEBI	arabinose	+	carbon source
32547	22653 ChEBI	asparagine	+	carbon source
32547	35391 ChEBI	aspartate	+	carbon source
32547	17057 ChEBI	cellobiose	+	carbon source
32547	23652 ChEBI	dextrin	+	carbon source
32547	4853 ChEBI	esculin	+	hydrolysis
32547	28757 ChEBI	fructose	+	carbon source
32547	28260 ChEBI	galactose	+	carbon source
32547	17234 ChEBI	glucose	+	carbon source
32547	29987 ChEBI	glutamate	+	carbon source
32547	28087 ChEBI	glycogen	+	carbon source
32547	21217 ChEBI	L-alaninamide	+	carbon source
32547	24996 ChEBI	lactate	+	carbon source
32547	17716 ChEBI	lactose	+	carbon source
32547	17306 ChEBI	maltose	+	carbon source
32547	37684 ChEBI	mannose	+	carbon source
32547	28053 ChEBI	melibiose	+	carbon source
32547	37657 ChEBI	methyl D-glucoside	+	carbon source
32547	506227 ChEBI	N-acetylglucosamine	+	carbon source
32547	16634 ChEBI	raffinose	+	carbon source
32547	30031 ChEBI	succinate	+	carbon source
32547	17992 ChEBI	sucrose	+	carbon source
32547	27082 ChEBI	trehalose	+	carbon source
32547	27248 ChEBI	urocanic acid	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32547	acid phosphatase	+	3.1.3.2
32547	alkaline phosphatase	+	3.1.3.1
32547	alpha-galactosidase	+	3.2.1.22
32547	catalase	+	1.11.1.6
32547	cytochrome oxidase	+	1.9.3.1
32547	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sandy

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
32547	Sand
120493	Environment, Sand sample	Desert of Xinjiang	China	CHN	Asia	2007

Taxonmaps

69479

Global distribution of 16S sequence DQ888330 (>99% sequence identity) for Pontibacter korlensis from Microbeatlas

Aquatic Samples	58
Soil Samples	81
Animal Samples	51
Plant Samples	13
Total Samples	203

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
120493	1	Risk group (French classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32547	Pontibacter korlensis strain X14-1 16S ribosomal RNA gene, partial sequence	DQ888330	1435		400092

GC content

32547

GC-content (mol%)48.2

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Unraveling adaptation of Pontibacter korlensis to radiation and infertility in desert through complete genome and comparative transcriptomic analysis.	Dai J, Dai W, Qiu C, Yang Z, Zhang Y, Zhou M, Zhang L, Fang C, Gao Q, Yang Q, Li X, Wang Z, Wang Z, Jia Z, Chen X	Sci Rep	10.1038/srep10929	2015
	Pontibacter kalidii sp. nov., isolated from rhizosphere soil of Kalidium foliatum.	Wang HN, Jiang L, Osman G, Chu M, Gu MY, Tang QY, Zhu YL, Zhu J, Zhang ZD.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006087	2023
Phylogeny	Pontibacter oryzae sp. nov., a carotenoid-producing species isolated from a rice paddy field.	Chhetri G, Kim J, Kim H, Kim I, Seo T	Antonie Van Leeuwenhoek	10.1007/s10482-019-01298-0	2019
Phylogeny	Erythrobacter odishensis sp. nov. and Pontibacter odishensis sp. nov. isolated from dry soil of a solar saltern.	Subhash Y, Tushar L, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.052183-0	2013
Phylogeny	Pontibacter korlensis sp. nov., isolated from the desert of Xinjiang, China.	Zhang L, Zhang Q, Luo X, Tang Y, Dai J, Li Y, Wang Y, Chen G, Fang C	Int J Syst Evol Microbiol	10.1099/ijs.0.65667-0	2008
Phylogeny	Pontibacter cellulosilyticus sp. nov., a carboxymethyl cellulose-hydrolysing bacterium isolated from coastal water.	Kang M, Chhetri G, Kim J, Kim I, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.005058	2021
Phylogeny	Pontibacter mangrovi sp. nov., isolated from mangrove sediment.	Mo KL, Wang L, Wu QJ, Ye L, Liu XD, Hu YH, Huang HQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004280	2020
Phylogeny	Pontibacter terrae sp. nov., isolated from soil.	Kim DU, Kim JY, Jang JH, Kim MK	Int J Syst Evol Microbiol	10.1099/ijsem.0.002964	2018
Phylogeny	Pontibacter aurantiacus sp. nov. isolated from hexachlorocyclohexane (HCH) contaminated soil.	Singh P, Kumari R, Nayyar N, Lal R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001833	2017
Phylogeny	Pontibacter chinhatensis sp. nov., isolated from pond sediment containing discarded hexachlorocyclohexane isomer waste.	Singh AK, Garg N, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.000241	2015
Phylogeny	Pontibacter rhizosphera sp. nov., isolated from rhizosphere soil of an Indian medicinal plant Nerium indicum.	Raichand R, Kaur I, Singh NK, Mayilraj S	Antonie Van Leeuwenhoek	10.1007/s10482-011-9573-2	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28765	IJSEM 1210 2008 ( DOI 10.1099/ijs.0.65667-0 , PubMed 18450715 )
#32547	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28765
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120493	Collection of Institut Pasteur ; Curators of the CIP; CIP 110462
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pontibacter korlensis (CCTCC AB 206081, NRRL B-51097, X14-1)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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