Name: Streptomyces deccanensis DAS-139
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134332

Type strain:

Species: Streptomyces deccanensis

Strain Designation: DAS-139

Culture col. no.: KCTC 19241, CCTCC AA 207004

NCBI tax ID(s): 424188 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Streptomyces deccanensis DAS-139 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces deccanensis**
	Full Scientific Name (LPSN)	Streptomyces deccanensis Dastager et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32460]	Gram stain	positive

[Ref.: #32460]	Motility	no

[Ref.: #32460]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #32460]			growth	28-45 °C
[Ref.: #32460]			optimum	40 °C

	pH	Kind of pH		pH
[Ref.: #32460]			growth	07-12

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32460]

Oxygen tolerance

aerobe

[Ref.: #32460]	Ability of spore formation	yes
[Ref.: #125438]	Ability of spore formation	yes Confidence in %90.898

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32460]		NaCl		growth	7	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32460]	myo-inositol ChEBI	+	carbon source
[Ref.: #32460]	nitrate ChEBI	+	reduction
[Ref.: #32460]	raffinose ChEBI	+	carbon source
[Ref.: #32460]	rhamnose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity
[Ref.: #32460]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32460]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32460]	Streptomyces deccanensis strain DAS-139 16S ribosomal RNA gene, partial sequence	EF219459	1524	GenBank ENA	424188 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces deccanensis KCTC 19241	GCA_022385335	complete	GenBank ENA	424188 tax ID	*

[Ref.: #32460]

GC-content

71.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces deccanensis KCTC 19241 NCBI: GCA_022385335.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	87.998	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.516	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	88.478	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	90.898	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	88	yes

Availability in culture collections External links

[Ref.: #32460]

Culture collection no.

KCTC 19241, CCTCC AA 207004

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces phaeolivaceus sp. nov. and Streptomyces broussonetiae sp. nov., isolated from the leaves and rhizosphere soil of Broussonetia papyrifera.	Mo P, Liu J, Zhao Y, Xu Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.004556	2020	*
Phylogeny	Streptomyces deccanensis sp. nov., an alkaliphilic species isolated from soil.	Dastager SG, Kim CJ, Lee JC, Agasar D, Park DJ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65525-0	2008	*
Phylogeny	Streptomyces akebiae sp. nov., a novel actinomycete isolated from rhizosphere soil of Akebia trifoliate.	Mo P, Li K, Zhou J, Zhou F, Chen Y, Lin X, Liu X, Huang K, Zou W, Gao J	Antonie Van Leeuwenhoek	10.1007/s10482-022-01772-2	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32460

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28682 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#28682

IJSEM 1089 2008 ( DOI 10.1099/ijs.0.65525-0 , PubMed 18450694 )

* These data were automatically processed and therefore are not curated

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Streptomyces deccanensis KCTC 19241

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