Luteolibacter pohnpeiensis (KCTC 22041, A4T-83, MBIC 08322)

Name: Luteolibacter pohnpeiensis (KCTC 22041, A4T-83, MBIC 08322)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134331

Type strain

Strain Designation A4T-83

Culture col. no. KCTC 22041 A4T-83 MBIC 08322

NCBI tax ID(s) 454153

Special Collections KCTC Literature strains

History <- JW Yoon, Tokyo Univ. <- K Adachi, MBI

Links

Luteolibacter pohnpeiensis A4T-83 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from Driftwood.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 285712

KCTC 22041

@ref 20215

Last LPSN update 2026-02-09 11:32:10

Domain Bacteria

Phylum Verrucomicrobiota

Class Verrucomicrobiia

Order Verrucomicrobiales

Family Verrucomicrobiaceae

Genus Luteolibacter

Species Luteolibacter pohnpeiensis

Full scientific name Luteolibacter pohnpeiensis Yoon et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32455	negative	1.75 µm	0.65 µm	rod-shaped
67771				rod-shaped
67771	negative
125438	negative				91.394

Pigmentation

32455

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
32455	positive	growth	20-37
32455	positive	optimum	33.5	mesophilic
67771	positive	growth	30-37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
32455	positive	growth	6.5-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	obligate aerobe	92.7

Spore formation

@ref	Spore formation	Confidence
32455
125439		96.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32455	NaCl	positive	growth	<6 %

Observation

67771

Observationquinones: MK-9, MK-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32455	22599 ChEBI	arabinose	+	carbon source
32455	17057 ChEBI	cellobiose	+	carbon source
32455	23652 ChEBI	dextrin	+	carbon source
32455	28757 ChEBI	fructose	+	carbon source
32455	28260 ChEBI	galactose	+	carbon source
32455	17234 ChEBI	glucose	+	carbon source
32455	17754 ChEBI	glycerol	+	carbon source
32455	17716 ChEBI	lactose	+	carbon source
32455	17306 ChEBI	maltose	+	carbon source
32455	37684 ChEBI	mannose	+	carbon source
32455	28053 ChEBI	melibiose	+	carbon source
32455	37657 ChEBI	methyl D-glucoside	+	carbon source
32455	16634 ChEBI	raffinose	+	carbon source
32455	30911 ChEBI	sorbitol	+	carbon source
32455	17992 ChEBI	sucrose	+	carbon source
32455	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32455	acid phosphatase	+	3.1.3.2
32455	alkaline phosphatase	+	3.1.3.1
32455	alpha-galactosidase	+	3.2.1.22
32455	catalase	+	1.11.1.6
32455	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	-
#Host Body Product	#Plant	#Timber
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
32455	Driftwood
67771	From a piece of driftwood from Mangrove coast	Pohnpei Island(0Â° 58â€² 48â€³ N 15Â° 10â€² 36â€³ E)	Micronesia, Federated States of	FSM	Australia and Oceania

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1659543v1 assembly for Luteolibacter pohnpeiensis KCTC 22041	contig	GCA_016595435	454153.3	2994569919	454153	25.83

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32455	Luteolibacter pohnpeiensis gene for 16S rRNA, partial sequence, strain: A4T-83	AB331895	1478		454153

GC content

32455

GC-content (mol%)55.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Luteolibacter pohnpeiensis KCTC 22041
NCBI: GCA_016595435

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.50	no
125439	motility	BacteriaNetⓘ	no	56.90	no
125439	gram_stain	BacteriaNetⓘ	negative	84.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Luteolibacter pohnpeiensis strain KCTC 22041
PATRIC: 454153.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	91.39	yes
125438	anaerobic	anaerobicⓘ	no	93.23	yes
125438	spore-forming	spore-formingⓘ	no	85.58	yes
125438	aerobic	aerobicⓘ	yes	78.27	yes
125438	thermophilic	thermophileⓘ	no	94.96	yes
125438	flagellated	motile2+ⓘ	no	68.52	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Luteolibacter ambystomatis sp. nov., isolated from the skin of an Anderson's salamander (Ambystoma andersoni).	Busse HJ, Kampfer P, Szostak MP, Spergser J	Int J Syst Evol Microbiol	10.1099/ijsem.0.005043	2021
Phylogeny	Luteolibacter arcticus sp. nov., isolated from high Arctic tundra soil, and emended description of the genus Luteolibacter.	Kim M, Pak S, Rim S, Ren L, Jiang F, Chang X, Liu P, Zhang Y, Fang C, Zheng C, Peng F	Int J Syst Evol Microbiol	10.1099/ijs.0.000202	2015
Phylogeny	Luteolibacter yonseiensis sp. nov., isolated from activated sludge using algal metabolites.	Park J, Baek GS, Woo SG, Lee J, Yang J, Lee J	Int J Syst Evol Microbiol	10.1099/ijs.0.046664-0	2012
Phylogeny	Luteolibacter luojiensis sp. nov., isolated from Arctic tundra soil, and emended description of the genus Luteolibacter.	Jiang F, Li W, Xiao M, Dai J, Kan W, Chen L, Li W, Fang C, Peng F	Int J Syst Evol Microbiol	10.1099/ijs.0.037309-0	2011
Phylogeny	Description of Persicirhabdus sediminis gen. nov., sp. nov., Roseibacillus ishigakijimensis gen. nov., sp. nov., Roseibacillus ponti sp. nov., Roseibacillus persicicus sp. nov., Luteolibacter pohnpeiensis gen. nov., sp. nov. and Luteolibacter algae sp. nov., six marine members of the phylum 'Verrucomicrobia', and emended descriptions of the class Verrucomicrobiae, the order Verrucomicrobiales and the family Verrucomicrobiaceae.	Yoon J, Matsuo Y, Adachi K, Nozawa M, Matsuda S, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.65520-0	2008
Phylogeny	Luteolibacter marinus sp. nov., a novel bacterium in the family Verrucomicrobiaceae, isolated from marine sediment.	Xie F, Zhu S, Guo C, Liu X, He S, Zhang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.005544	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28677	IJSEM 998 2008 ( DOI 10.1099/ijs.0.65520-0 , PubMed 18398209 )
#32455	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28677
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Luteolibacter pohnpeiensis (KCTC 22041, A4T-83, MBIC 08322)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_016595435

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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