Name: Luteolibacter pohnpeiensis A4T-83
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134331

Type strain:

Species: Luteolibacter pohnpeiensis

Strain Designation: A4T-83

Culture col. no.: KCTC 22041, MBIC 08322

Strain history: <- JW Yoon, Tokyo Univ. <- K Adachi, MBI

NCBI tax ID(s): 454153 (species)

Special Collections

Section

Luteolibacter pohnpeiensis A4T-83 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Driftwood.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Verrucomicrobiota*
	Class	*Verrucomicrobiia*
	Order	*Verrucomicrobiales*
	Family	*Verrucomicrobiaceae*
	Genus	*Luteolibacter*
	Species	**Luteolibacter pohnpeiensis**
	Full Scientific Name (LPSN)	Luteolibacter pohnpeiensis Yoon et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32455]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %91.394

[Ref.: #32455]	Cell length	1.75 µm

[Ref.: #32455]	Cell width	0.65 µm

[Ref.: #32455]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #32455]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #32455]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32455]	growth	20-37 °C
[Ref.: #32455]	optimum	33.5 °C
[Ref.: #67771]	growth	30-37 °C

	pH	Kind of pH		pH
[Ref.: #32455]			growth	6.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #32455]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %99

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32455]		NaCl		growth	<6	%

[Ref.: #67771]

Observation

quinones: MK-9, MK-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32455]	arabinose ChEBI	+	carbon source
[Ref.: #32455]	cellobiose ChEBI	+	carbon source
[Ref.: #32455]	dextrin ChEBI	+	carbon source
[Ref.: #32455]	fructose ChEBI	+	carbon source
[Ref.: #32455]	galactose ChEBI	+	carbon source
[Ref.: #32455]	glucose ChEBI	+	carbon source
[Ref.: #32455]	glycerol ChEBI	+	carbon source
[Ref.: #32455]	lactose ChEBI	+	carbon source
[Ref.: #32455]	maltose ChEBI	+	carbon source
[Ref.: #32455]	mannose ChEBI	+	carbon source
[Ref.: #32455]	melibiose ChEBI	+	carbon source
[Ref.: #32455]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #32455]	raffinose ChEBI	+	carbon source
[Ref.: #32455]	sorbitol ChEBI	+	carbon source
[Ref.: #32455]	sucrose ChEBI	+	carbon source
[Ref.: #32455]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32455]	acid phosphatase	+	3.1.3.2
[Ref.: #32455]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32455]	alpha-galactosidase	+	3.2.1.22
[Ref.: #32455]	catalase	+	1.11.1.6
[Ref.: #32455]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32455]	Sample type/isolated from	Driftwood

[Ref.: #67771]	Sample type/isolated from	From a piece of driftwood from Mangrove coast
[Ref.: #67771]	Geographic location (country and/or sea, region)	Pohnpei Island(0Â° 58â€² 48â€³ N 15Â° 10â€² 36â€³ E)
[Ref.: #67771]	Country	Micronesia, Federated States of
[Ref.: #67771]	Country ISO 3 Code	FSM
[Ref.: #67771]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Host Body Product	#Plant	#Timber
#Host	#Plants	#Tree

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32455]	Luteolibacter pohnpeiensis gene for 16S rRNA, partial sequence, strain: A4T-83	AB331895	1478	GenBank ENA	454153 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Luteolibacter pohnpeiensis KCTC 22041	GCA_016595435	contig	GenBank ENA	454153 tax ID	*
[Ref.: #66792]	Luteolibacter pohnpeiensis strain KCTC 22041	454153.3	wgs	PATRIC	454153 tax ID	*

[Ref.: #32455]

GC-content

55.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Luteolibacter pohnpeiensis strain KCTC 22041 PATRIC: 454153.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Luteolibacter pohnpeiensis strain KCTC 22041 PATRIC: 454153.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	91.394	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.229	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.575	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	78.265	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.964	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	68.524	yes

Availability in culture collections External links

[Ref.: #32455]

Culture collection no.

KCTC 22041, MBIC 08322

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Luteolibacter ambystomatis sp. nov., isolated from the skin of an Anderson's salamander (Ambystoma andersoni).	Busse HJ, Kampfer P, Szostak MP, Spergser J	Int J Syst Evol Microbiol	10.1099/ijsem.0.005043	2021	*
Phylogeny	Luteolibacter arcticus sp. nov., isolated from high Arctic tundra soil, and emended description of the genus Luteolibacter.	Kim M, Pak S, Rim S, Ren L, Jiang F, Chang X, Liu P, Zhang Y, Fang C, Zheng C, Peng F	Int J Syst Evol Microbiol	10.1099/ijs.0.000202	2015	*
Phylogeny	Luteolibacter yonseiensis sp. nov., isolated from activated sludge using algal metabolites.	Park J, Baek GS, Woo SG, Lee J, Yang J, Lee J	Int J Syst Evol Microbiol	10.1099/ijs.0.046664-0	2012	*
Phylogeny	Luteolibacter luojiensis sp. nov., isolated from Arctic tundra soil, and emended description of the genus Luteolibacter.	Jiang F, Li W, Xiao M, Dai J, Kan W, Chen L, Li W, Fang C, Peng F	Int J Syst Evol Microbiol	10.1099/ijs.0.037309-0	2011	*
Phylogeny	Description of Persicirhabdus sediminis gen. nov., sp. nov., Roseibacillus ishigakijimensis gen. nov., sp. nov., Roseibacillus ponti sp. nov., Roseibacillus persicicus sp. nov., Luteolibacter pohnpeiensis gen. nov., sp. nov. and Luteolibacter algae sp. nov., six marine members of the phylum 'Verrucomicrobia', and emended descriptions of the class Verrucomicrobiae, the order Verrucomicrobiales and the family Verrucomicrobiaceae.	Yoon J, Matsuo Y, Adachi K, Nozawa M, Matsuda S, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.65520-0	2008	*
Phylogeny	Luteolibacter marinus sp. nov., a novel bacterium in the family Verrucomicrobiaceae, isolated from marine sediment.	Xie F, Zhu S, Guo C, Liu X, He S, Zhang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.005544	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32455

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28677 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#28677

IJSEM 998 2008 ( DOI 10.1099/ijs.0.65520-0 , PubMed 18398209 )

* These data were automatically processed and therefore are not curated

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Luteolibacter pohnpeiensis strain KCTC 22041

Luteolibacter pohnpeiensis strain KCTC 22041

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