Streptacidiphilus rugosus (NBRC 103186, KCTC 19279, DSM 108660)

Name: Streptacidiphilus rugosus (NBRC 103186, KCTC 19279, DSM 108660)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134321

Type strain

Strain Designation AM16

Culture col. no. NBRC 103186 KCTC 19279 DSM 108660 AM16 JCM 16225

NCBI tax ID(s) 981369 405783

Special Collections DSMZ JCM KCTC Literature strains

History DSMZ <- NBRC; NBRC 103186 <- S. B. Kim and S. H. Cho, School Biosci. Biotechnol., Chungnam Natl. Univ., Republic of Korea; AM16 JCM <-- KCTC 19279 <-- S. B. Kim AM16. KCTC <- SB Kim, Chungnam Natl. Univ.

Links

Streptacidiphilus rugosus AM16 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398612

KCTC 19279,JCM 16225,NBRC 103186,DSM 108660

@ref 20215

Last LPSN update 2026-05-29 08:38:18

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptacidiphilus

Species Streptacidiphilus rugosus

Full scientific name Streptacidiphilus rugosus Cho et al. 2008

Morphology

Cell morphology

67771

Gram stainpositive

Pigmentation

32427

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
64724	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
64724	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
64724	ISP2 MEDIUM (DSMZ Medium 987)	Medium recipe at MediaDive	Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
32427	positive	growth	28-35
64724	positive	growth	28
67770	positive	growth	28
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
32427	positive	growth	03-08	acidophile

Physiology and metabolism

Oxygen tolerance

67771

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
32427
125438		91.234

Observation

67770

Observationquinones: MK-9(H₈), MK-9(H₆)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32427	29016 ChEBI	arginine	+	carbon source
32427	24265 ChEBI	gluconate	+	carbon source
32427	17754 ChEBI	glycerol	+	carbon source
32427	17268 ChEBI	myo-inositol	+	carbon source
32427	30911 ChEBI	sorbitol	+	carbon source
32427	17992 ChEBI	sucrose	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
32427	soil
64724	soil of Pinus thunbergii		Anmyeon, Tae-an, Chungnam	Republic of Korea	KOR	Asia
67770	Pinus-associated soil	Pinus	Anmyeon, near the coastal areas of Tae-An, Chungnam	Republic of Korea	KOR	Asia
67771	From `Pinus` soil			Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ904547 (>99% sequence identity) for Streptacidiphilus from Microbeatlas

Aquatic Samples	86
Soil Samples	623
Animal Samples	112
Plant Samples	31
Total Samples	852

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64724	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM74465v1 assembly for Streptacidiphilus rugosus AM-16	contig	GCA_000744655	981369.3	2574179761	981369	76.74

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64724	Streptacidiphilus rugosus AM-16 16S ribosomal RNA gene, partial sequence	DQ904547	1383		981369

GC content

@ref	GC-content (mol%)	Method
67770	71.8	genome sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptacidiphilus rugosus AM-16 AM-16
NCBI: GCA_000744655.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.55	no
125438	anaerobic	anaerobicⓘ	no	96.78	yes
125438	aerobic	aerobicⓘ	yes	86.88	no
125438	spore-forming	spore-formingⓘ	yes	91.23	yes
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	no	89.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptacidiphilus monticola sp. nov., a novel actinomycete isolated from soil.	Song W, Duan L, Jin L, Zhao J, Jiang S, Sun T, Guo XW, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.002751	2018
Phylogeny	Streptacidiphilus anmyonensis sp. nov., Streptacidiphilus rugosus sp. nov. and Streptacidiphilus melanogenes sp. nov., acidophilic actinobacteria isolated from Pinus soils.	Cho SH, Han JH, Ko HY, Kim SB	Int J Syst Evol Microbiol	10.1099/ijs.0.65480-0	2008

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28650	IJSEM 1566 2008 ( DOI 10.1099/ijs.0.65480-0 , PubMed 18599696 )
#32427	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28650
#64724	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108660
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptacidiphilus rugosus (NBRC 103186, KCTC 19279, DSM 108660)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000744655

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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