Name: Brucella microti BCCN 07-01
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134306

Type strain:

Species: Brucella microti

Culture col. no.: BCCN 07-01, CAPM 6434, CCM 4915

NCBI tax ID(s): 568815 (strain), 444163 (species)

SI-ID 139433

CCM 4915

Section

Brucella microti BCCN 07-01 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Liver of vole.

Gram-negative
rod-shaped
aerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Brucellaceae*
	Genus	*Brucella*
	Species	**Brucella microti**
	Full Scientific Name (LPSN)	Brucella microti Scholz et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32345]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.982

[Ref.: #32345]	Cell length	1 µm

[Ref.: #32345]	Cell width	0.65 µm

[Ref.: #32345]	Cell shape	rod-shaped

[Ref.: #32345]	Motility	no

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #32345]			growth	25-42 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32345]

Oxygen tolerance

aerobe

[Ref.: #32345]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

[Ref.: #32345]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32345]	adipate ChEBI	+	carbon source
[Ref.: #32345]	arabinose ChEBI	+	carbon source
[Ref.: #32345]	glucose ChEBI	+	carbon source
[Ref.: #32345]	maltose ChEBI	+	carbon source
[Ref.: #32345]	mannose ChEBI	+	carbon source
[Ref.: #32345]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32345]	nitrate ChEBI	+	reduction

	Enzyme	Enzyme activity	EC number
[Ref.: #32345]	acid phosphatase	+	3.1.3.2
[Ref.: #32345]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32345]	catalase	+	1.11.1.6
[Ref.: #32345]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32345]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32345]	Sample type/isolated from	Liver of vole
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Rodentia (Other)
#Host Body-Site	#Organ	#Liver

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Brucella microti CCM 4915	GCA_000022745	complete	GenBank	568815 tax ID	*
[Ref.: #66792]	Brucella microti CCM 4915	568815.3	complete	PATRIC	568815 tax ID	*
[Ref.: #66792]	Brucella microti CCM 4915	644736332	complete	JGI IMG/M	568815 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Brucella microti CCM 4915 CCM 4915 NCBI: GCA_000022745.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Brucella microti CCM 4915 CCM 4915 NCBI: GCA_000022745.1
[Ref.: #69480]	motile	no	61.83	yes
[Ref.: #69480]	flagellated	no	87.497	yes
[Ref.: #69480]	gram-positive	no	98.618	yes
[Ref.: #69480]	anaerobic	no	97.91	no
[Ref.: #69480]	aerobic	yes	90.377	yes
[Ref.: #69480]	halophile	no	89.852	no
[Ref.: #69480]	spore-forming	no	96.003	no
[Ref.: #69480]	glucose-util	yes	88.115	yes
[Ref.: #69480]	thermophile	no	93.835	no
[Ref.: #69480]	glucose-ferment	no	90.619	no

Availability in culture collections External links

[Ref.: #32345]

Culture collection no.

BCCN 07-01, CAPM 6434, CCM 4915

[Ref.: #91885]

SI-ID 139433

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Lethality of Brucella microti in a murine model of infection depends on the wbkE gene involved in O-polysaccharide synthesis.	Ouahrani-Bettache S, Jimenez De Bagues MP, De La Garza J, Freddi L, Bueso JP, Lyonnais S, Al Dahouk S, De Biase D, Kohler S, Occhialini A	Virulence	10.1080/21505594.2019.1682762	2019	*
Phylogeny	Brucella microti sp. nov., isolated from the common vole Microtus arvalis.	Scholz HC, Hubalek Z, Sedlacek I, Vergnaud G, Tomaso H, Al Dahouk S, Melzer F, Kampfer P, Neubauer H, Cloeckaert A, Maquart M, Zygmunt MS, Whatmore AM, Falsen E, Bahn P, Gollner C, Pfeffer M, Huber B, Busse HJ, Nockler K	Int J Syst Evol Microbiol	10.1099/ijs.0.65356-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32345

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28576 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91885

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID139433.1 )

#28576

IJSEM 375 2008 ( DOI 10.1099/ijs.0.65356-0 , PubMed 18218934 )

* These data were automatically processed and therefore are not curated

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Brucella microti CCM 4915 CCM 4915

Brucella microti CCM 4915 CCM 4915

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