Actibacter sediminis (KCTC 12704, JCM 14002, JC2129)

Name: Actibacter sediminis (KCTC 12704, JCM 14002, JC2129)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134305

Type strain

Strain Designation JC2129

Culture col. no. KCTC 12704 JCM 14002 JC2129

NCBI tax ID(s) 449463

Special Collections JCM KCTC Literature strains

Actibacter sediminis JC2129 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from marine sediment.

Gram-negative rod-shaped aerobe 16S sequence

Name and taxonomic classification

Culture Collection Numbers

KCTC 12704 JCM 14002 JC2129

@ref 20215

Last LPSN update 2025-12-16 10:02:01

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Actibacter

Species Actibacter sediminis

Full scientific name Actibacter sediminis Kim et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
32340	negative	2.8 µm	0.8 µm	rod-shaped
67771				rod-shaped
67771	negative

Pigmentation

32340

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
32340	positive	growth	05-45
32340	positive	optimum	37
67770	positive	growth	30
67771	positive	growth	37

Culture pH

@ref	Ability	Type	PH
32340	positive	optimum	6
32340	positive	growth	05-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
32340	aerobe
67771	aerobe

Spore formation

32340

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32340	NaCl	positive	growth	01-10 %
32340	NaCl	positive	optimum	2 %

Observation

@ref	Observation
67770	quinones: MK-6, MK-7
67771	quinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32340	30089 ChEBI	acetate	+	carbon source
32340	16947 ChEBI	citrate	+	carbon source
32340	4853 ChEBI	esculin	+	hydrolysis
32340	29987 ChEBI	glutamate	+	carbon source
32340	15361 ChEBI	pyruvate	+	carbon source
32340	17992 ChEBI	sucrose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32340	acid phosphatase	+	3.1.3.2
32340	alkaline phosphatase	+	3.1.3.1
32340	catalase	+	1.11.1.6
32340	cytochrome oxidase	+	1.9.3.1
32340	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type
32340	marine sediment
67770	Tidal flat sediment of Dongmak on Ganghwa Island
67771	From sediment of getbol(a Korean word for tidal flat)

Taxonmaps

69479

Global distribution of 16S sequence EF670651 (>99% sequence identity) for Actibacter from Microbeatlas

Aquatic Samples	4687
Soil Samples	60
Animal Samples	75
Plant Samples	32
Total Samples	4854

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32340	Actibacter sediminis strain JC2129 16S ribosomal RNA gene, partial sequence	EF670651	1374		449463

GC content

@ref	GC-content (mol%)
32340	43-45
67770	43-45
67771	43.0-45.0

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actibacter sediminis gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from tidal flat sediment.	Kim JH, Kim KY, Hahm YT, Kim BS, Chun J, Cha CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65346-0	2008

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#32340	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28572 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

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Actibacter sediminis (KCTC 12704, JCM 14002, JC2129)

Name and taxonomic classification

Culture Collection Numbers

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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