Name: Litorivicinus lipolyticus KCCM 42360
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134256

Type strain:

Species: Litorivicinus lipolyticus

Culture col. no.: KCCM 42360, NBRC 102074, IMCC 1097

NCBI tax ID(s): 418701 (species)

Section

Litorivicinus lipolyticus KCCM 42360 is a facultative aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
facultative aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Litorivicinaceae*
	Genus	*Litorivicinus*
	Species	**Litorivicinus lipolyticus**
	Full Scientific Name (LPSN)	Litorivicinus lipolyticus (Kim et al. 2007) Deshmukh and Oren 2023

Synonym

Litoricola lipolytica

Information on morphological and physiological properties Morphology

[Ref.: #32162]	Gram stain	negative

[Ref.: #32162]	Cell length	1.05 µm

[Ref.: #32162]	Cell width	0.6 µm

[Ref.: #32162]	Cell shape	rod-shaped

[Ref.: #32162]	Motility	no

[Ref.: #32162]

Pigment production

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #32162]			growth	15-30 °C
[Ref.: #32162]			optimum	25 °C

[Ref.: #32162]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #32162]			optimum	7
[Ref.: #32162]			growth	5.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32162]

Oxygen tolerance

facultative aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32162]		NaCl		growth	1.5-10	%
[Ref.: #32162]		NaCl		optimum	3.25	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32162]	alanine ChEBI	+	carbon source
[Ref.: #32162]	arabinose ChEBI	+	carbon source
[Ref.: #32162]	cellobiose ChEBI	+	carbon source
[Ref.: #32162]	citrate ChEBI	+	carbon source
[Ref.: #32162]	esculin ChEBI	+	hydrolysis
[Ref.: #32162]	ethanol ChEBI	+	carbon source
[Ref.: #32162]	galactose ChEBI	+	carbon source
[Ref.: #32162]	gluconate ChEBI	+	carbon source
[Ref.: #32162]	glycerol ChEBI	+	carbon source
[Ref.: #32162]	histidine ChEBI	+	carbon source
[Ref.: #32162]	itaconate ChEBI	+	carbon source
[Ref.: #32162]	mannitol ChEBI	+	carbon source
[Ref.: #32162]	mannose ChEBI	+	carbon source
[Ref.: #32162]	melibiose ChEBI	+	carbon source
[Ref.: #32162]	myo-inositol ChEBI	+	carbon source
[Ref.: #32162]	ornithine ChEBI	+	carbon source
[Ref.: #32162]	proline ChEBI	+	carbon source
[Ref.: #32162]	propionate ChEBI	+	carbon source
[Ref.: #32162]	pyruvate ChEBI	+	carbon source
[Ref.: #32162]	raffinose ChEBI	+	carbon source
[Ref.: #32162]	rhamnose ChEBI	+	carbon source
[Ref.: #32162]	ribitol ChEBI	+	carbon source
[Ref.: #32162]	ribose ChEBI	+	carbon source
[Ref.: #32162]	serine ChEBI	+	carbon source
[Ref.: #32162]	sucrose ChEBI	+	carbon source
[Ref.: #32162]	trehalose ChEBI	+	carbon source
[Ref.: #32162]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32162]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32162]	Sample type/isolated from	seawater
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF176580 (>99% sequence identity) for Litoricola lipolytica subclade from Microbeatlas

Aquatic Samples	1136
Soil Samples	26
Animal Samples	97
Plant Samples	5
Total Samples	1264

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32162]	Litoricola lipolytica strain IMCC1097 16S ribosomal RNA gene, partial sequence	EF176580	1483	GenBank	418701 tax ID

[Ref.: #32162]

GC-content

57.9 mol%

Availability in culture collections External links

[Ref.: #32162]

Culture collection no.

KCCM 42360, NBRC 102074, IMCC 1097

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Litoricolaceae fam. nov., to include Litoricola lipolytica gen. nov., sp. nov., a marine bacterium belonging to the order Oceanospirillales.	Kim H, Choo YJ, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.65059-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32162

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28405 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#28405

IJSEM 1783 2007 ( DOI 10.1099/ijs.0.65059-0 , PubMed 17684259 )

* These data were automatically processed and therefore are not curated

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