Name: Hymenobacter xinjiangensis X2-1g
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134255

Type strain:

Species: Hymenobacter xinjiangensis

Strain Designation: X2-1g

Culture col. no.: CCTCC AB 206080, IAM 15452, JCM 23206, BCRC 80947, CIP 109772

Strain history: CIP <- 2007, JCM <- 2007, IAM <- Q. Zhang, Wuhan Univ., Wuhan, China: strain X2-1g

NCBI tax ID(s): 400091 (species)

SI-ID 309456

IAM 15452, JCM 23206, CIP 109772

Section

Hymenobacter xinjiangensis X2-1g is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Gamma-irradiated soil of the Xinjiang desert.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter xinjiangensis**
	Full Scientific Name (LPSN)	Hymenobacter xinjiangensis Zhang et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32144]	Gram stain	negative
[Ref.: #123982]	Gram stain	negative

[Ref.: #32144]	Cell length	3.5 µm

[Ref.: #32144]	Cell width	0.7 µm

[Ref.: #32144]	Cell shape	rod-shaped
[Ref.: #123982]	Cell shape	rod-shaped

[Ref.: #32144]	Motility	no
[Ref.: #123982]	Motility	no

[Ref.: #32144]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36429]

Culture medium

MEDIUM 328- for nutrient agar

[Ref.: #36429]

Culture medium growth

[Ref.: #36429]

Culture medium composition

expand / minimize

[Ref.: #123982]

Culture medium

CIP Medium 328

[Ref.: #123982]

Culture medium growth

[Ref.: #123982]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #32144]	growth	4.0-37 °C
[Ref.: #32144]	optimum	28 °C
[Ref.: #36429]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #32144]	Temperature range	mesophilic
[Ref.: #36429]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32144]			optimum	7
[Ref.: #32144]			growth	5.0-7.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32144]

Oxygen tolerance

aerobe

[Ref.: #32144]

Ability of spore formation

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32144]	acetate ChEBI	+	carbon source
[Ref.: #32144]	alanine ChEBI	+	carbon source
[Ref.: #32144]	cellobiose ChEBI	+	carbon source
[Ref.: #32144]	dextrin ChEBI	+	carbon source
[Ref.: #32144]	esculin ChEBI	+	hydrolysis
[Ref.: #32144]	fructose ChEBI	+	carbon source
[Ref.: #32144]	fucose ChEBI	+	carbon source
[Ref.: #32144]	galactose ChEBI	+	carbon source
[Ref.: #32144]	galacturonate ChEBI	+	carbon source
[Ref.: #32144]	gluconate ChEBI	+	carbon source
[Ref.: #32144]	glucose ChEBI	+	carbon source
[Ref.: #32144]	glutamate ChEBI	+	carbon source
[Ref.: #32144]	maltose ChEBI	+	carbon source
[Ref.: #32144]	mannitol ChEBI	+	carbon source
[Ref.: #32144]	mannose ChEBI	+	carbon source
[Ref.: #32144]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #123982]	nitrate ChEBI	-	reduction
[Ref.: #123982]	nitrite ChEBI	-	reduction
[Ref.: #32144]	propionate ChEBI	+	carbon source
[Ref.: #32144]	serine ChEBI	+	carbon source
[Ref.: #32144]	sorbitol ChEBI	+	carbon source
[Ref.: #32144]	succinate ChEBI	+	carbon source
[Ref.: #32144]	sucrose ChEBI	+	carbon source
[Ref.: #32144]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #123982]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #32144]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #32144]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32144]	catalase	+	1.11.1.6
[Ref.: #123982]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #32144]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123982]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123982]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123982]	12099	-	+	+	+	-	+	+	+	+	-	+	+	-	-	-	-	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Gamma-irradiated soil of the Xinjiang desert
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #123982]	Sample type/isolated from	Environment, Soil, sand
[Ref.: #123982]	Geographic location (country and/or sea, region)	Xinjiang desert
[Ref.: #123982]	Country	China
[Ref.: #123982]	Country ISO 3 Code	CHN
[Ref.: #123982]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence DQ888329 (>99% sequence identity) for Hymenobacter xinjiangensis subclade from Microbeatlas

Aquatic Samples	3
Soil Samples	2
Animal Samples	4
Plant Samples	1
Total Samples	10

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #123982]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32144]	Hymenobacter xinjiangensis strain X2-1g 16S ribosomal RNA gene, partial sequence	DQ888329	1407	GenBank	400091 tax ID

[Ref.: #32144]	GC-content	54 mol%
[Ref.: #67770]	GC-content	54 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #32144]

Culture collection no.

CCTCC AB 206080, IAM 15452, JCM 23206, BCRC 80947, CIP 109772

[Ref.: #91845]

SI-ID 309456

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter pallidus sp. nov., isolated from a freshwater fish culture pond.	Sheu SY, Li YS, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002047	2017	*
Phylogeny	Hymenobacter tenuis sp. nov., isolated from wastewater of an acidic water neutralization facility.	Kang JW, Lee JH, Choe HN, Seong CN	Int J Syst Evol Microbiol	10.1099/ijsem.0.001918	2017	*
Phylogeny	Hymenobacter seoulensis sp. nov., isolated from river water.	Lee JJ, Lee YH, Park SJ, Lee SY, Park S, Kim MK, Ten LN, Jung HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.001668	2017	*
Phylogeny	Hymenobacter glacieicola sp. nov., isolated from glacier ice.	Liu K, Liu Y, Wang N, Gu Z, Shen L, Xu B, Zhou Y, Liu H, Jiao N	Int J Syst Evol Microbiol	10.1099/ijsem.0.001266	2016	*
Phylogeny	Hymenobacter mucosus sp. nov., isolated from a karst cave soil sample.	Liu L, Zhou EM, Jiao JY, Manikprabhu D, Ming H, Huang MJ, Yin YR, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000550	2015	*
Phylogeny	Hymenobacter xinjiangensis sp. nov., a radiation-resistant bacterium isolated from the desert of Xinjiang, China.	Zhang Q, Liu C, Tang Y, Zhou G, Shen P, Fang C, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.65033-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32144

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28388 (see below)

#36429 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91845

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309456.1 )

#123982 Collection of Institut Pasteur ; Curators of the CIP; CIP 109772

#28388

IJSEM 1752 2007 ( DOI 10.1099/ijs.0.65033-0 , PubMed 17684250 )

* These data were automatically processed and therefore are not curated

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