Hymenobacter xinjiangensis (CCTCC AB 206080, IAM 15452, X2-1g)

Name: Hymenobacter xinjiangensis (CCTCC AB 206080, IAM 15452, X2-1g)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134255

Type strain

Strain Designation X2-1g

Culture col. no. CCTCC AB 206080 IAM 15452 X2-1g CIP 109772 BCRC 80947 1 more

NCBI tax ID(s) 400091

Special Collections JCM CIP Literature strains

History IAM 15452 <-- Q. Zhang et al. X2-1g. CIP <- 2007, JCM <- 2007, IAM <- Q. Zhang, Wuhan Univ., Wuhan, China: strain X2-1g

Links

Hymenobacter xinjiangensis X2-1g is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from Gamma-irradiated soil of the Xinjiang desert.

Gram-negative rod-shaped aerobe 16S sequence

Name and taxonomic classification

SI-ID 309456

IAM 15452,JCM 23206,CIP 109772

@ref 20215

Last LPSN update 2025-12-16 10:02:00

Domain Pseudomonadati

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Hymenobacteraceae

Genus Hymenobacter

Species Hymenobacter xinjiangensis

Full scientific name Hymenobacter xinjiangensis Zhang et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32144	negative	3.5 µm	0.7 µm	rod-shaped
123982	negative			rod-shaped

Pigmentation

32144

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
36429	MEDIUM 328- for nutrient agar		Distilled water make up to (1000.000 ml);Agar (15.000 g);Peptone (5.000g);Beef extract (3.000 g)
123982	CIP Medium 328			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
32144	positive	growth	4.0-37
32144	positive	optimum	28	mesophilic
36429	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
32144	positive	optimum	7
32144	positive	growth	5.0-7.0

Physiology and metabolism

Oxygen tolerance

32144

Oxygen toleranceaerobe

Spore formation

32144

Spore formationno

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32144	30089 ChEBI	acetate	+	carbon source
32144	16449 ChEBI	alanine	+	carbon source
32144	17057 ChEBI	cellobiose	+	carbon source
32144	23652 ChEBI	dextrin	+	carbon source
32144	4853 ChEBI	esculin	+	hydrolysis
32144	28757 ChEBI	fructose	+	carbon source
32144	33984 ChEBI	fucose	+	carbon source
32144	28260 ChEBI	galactose	+	carbon source
32144	24175 ChEBI	galacturonate	+	carbon source
32144	24265 ChEBI	gluconate	+	carbon source
32144	17234 ChEBI	glucose	+	carbon source
32144	29987 ChEBI	glutamate	+	carbon source
32144	17306 ChEBI	maltose	+	carbon source
32144	29864 ChEBI	mannitol	+	carbon source
32144	37684 ChEBI	mannose	+	carbon source
32144	506227 ChEBI	N-acetylglucosamine	+	carbon source
123982	17632 ChEBI	nitrate	-	reduction
123982	16301 ChEBI	nitrite	-	reduction
32144	17272 ChEBI	propionate	+	carbon source
32144	17822 ChEBI	serine	+	carbon source
32144	30911 ChEBI	sorbitol	+	carbon source
32144	30031 ChEBI	succinate	+	carbon source
32144	17992 ChEBI	sucrose	+	carbon source
32144	27082 ChEBI	trehalose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123982	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
32144	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
32144	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
32144	catalase	+	1.11.1.6
123982	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
32144	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123982	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
123982	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123982	-	+	+	+	-	+	+	+	+	-	+	+	-	-	-	-	+	+	+	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Gamma-irradiated soil of the Xinjiang desert		China	CHN	Asia
123982	Environment, Soil, sand	Xinjiang desert	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ888329 (>99% sequence identity) for Hymenobacter xinjiangensis subclade from Microbeatlas

Aquatic Samples	3
Soil Samples	2
Animal Samples	4
Plant Samples	1
Total Samples	10

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
123982	1	Risk group (French classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32144	Hymenobacter xinjiangensis strain X2-1g 16S ribosomal RNA gene, partial sequence	DQ888329	1407		400091

GC content

@ref	GC-content (mol%)	Method
32144	54
67770	54	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter pallidus sp. nov., isolated from a freshwater fish culture pond.	Sheu SY, Li YS, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002047	2017
Phylogeny	Hymenobacter tenuis sp. nov., isolated from wastewater of an acidic water neutralization facility.	Kang JW, Lee JH, Choe HN, Seong CN	Int J Syst Evol Microbiol	10.1099/ijsem.0.001918	2017
Phylogeny	Hymenobacter seoulensis sp. nov., isolated from river water.	Lee JJ, Lee YH, Park SJ, Lee SY, Park S, Kim MK, Ten LN, Jung HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.001668	2017
Phylogeny	Hymenobacter glacieicola sp. nov., isolated from glacier ice.	Liu K, Liu Y, Wang N, Gu Z, Shen L, Xu B, Zhou Y, Liu H, Jiao N	Int J Syst Evol Microbiol	10.1099/ijsem.0.001266	2016
Phylogeny	Hymenobacter mucosus sp. nov., isolated from a karst cave soil sample.	Liu L, Zhou EM, Jiao JY, Manikprabhu D, Ming H, Huang MJ, Yin YR, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000550	2015
Phylogeny	Hymenobacter xinjiangensis sp. nov., a radiation-resistant bacterium isolated from the desert of Xinjiang, China.	Zhang Q, Liu C, Tang Y, Zhou G, Shen P, Fang C, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.65033-0	2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28388	IJSEM 1752 2007 ( DOI 10.1099/ijs.0.65033-0 , PubMed 17684250 )
#32144	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28388
#36429	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123982	Collection of Institut Pasteur ; Curators of the CIP; CIP 109772
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Hymenobacter xinjiangensis (CCTCC AB 206080, IAM 15452, X2-1g)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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