Name: Marinobacter segnicrescens SS011B1-4T
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134254

Type strain:

Species: Marinobacter segnicrescens

Strain Designation: SS011B1-4T

Culture col. no.: LMG 23928, CGMCC 1.6489

NCBI tax ID(s): 430453 (species)

SI-ID 293209

LMG 23928, CGMCC 1.6489

Special Collections

Literature strains

Section

Marinobacter segnicrescens SS011B1-4T is a Gram-negative, motile, ovoid-shaped bacterium that was isolated from marine sediment.

Gram-negative
motile
ovoid-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Marinobacter*
	Species	**Marinobacter segnicrescens**
	Full Scientific Name (LPSN)	Marinobacter segnicrescens Guo et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32141]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.494

[Ref.: #32141]	Cell length	1.05 µm

[Ref.: #32141]	Cell width	0.65 µm

[Ref.: #32141]	Cell shape	ovoid-shaped

[Ref.: #32141]	Motility	yes

[Ref.: #32141]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #32141]			growth	15-45 °C
[Ref.: #32141]			optimum	30-37 °C

	pH	Kind of pH		pH
[Ref.: #32141]			optimum	7.5-8
[Ref.: #32141]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32141]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32141]		NaCl		growth	01-15	%
[Ref.: #32141]		NaCl		optimum	04-08	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32141]	acetate ChEBI	+	carbon source
[Ref.: #32141]	citrate ChEBI	+	carbon source
[Ref.: #32141]	fructose ChEBI	+	carbon source
[Ref.: #32141]	gluconate ChEBI	+	carbon source
[Ref.: #32141]	glucose ChEBI	+	carbon source
[Ref.: #32141]	malate ChEBI	+	carbon source
[Ref.: #32141]	myo-inositol ChEBI	+	carbon source
[Ref.: #32141]	nitrate ChEBI	+	reduction
[Ref.: #32141]	propionate ChEBI	+	carbon source
[Ref.: #32141]	ribose ChEBI	+	carbon source
[Ref.: #32141]	sorbitol ChEBI	+	carbon source
[Ref.: #32141]	succinate ChEBI	+	carbon source
[Ref.: #32141]	sucrose ChEBI	+	carbon source
[Ref.: #32141]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #32141]		hydrogen sulfide ChEBI	yes
[Ref.: #32141]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #32141]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32141]		catalase	+	1.11.1.6
[Ref.: #32141]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32141]	Sample type/isolated from	marine sediment
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF157832 (>99% sequence identity) for Marinobacter from Microbeatlas

Aquatic Samples	63
Soil Samples	3
Animal Samples	1
Plant Samples	1
Total Samples	68

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32141]	Marinobacter segnicrescens strain SS011B1-4 16S ribosomal RNA gene, partial sequence	EF157832	1387	GenBank ENA	430453 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinobacter segnicrescens CGMCC 1.6489	GCA_900111555	scaffold	GenBank ENA	430453 tax ID	*
[Ref.: #66792]	Marinobacter segnicrescens strain CGMCC 1.6489	430453.7	wgs	PATRIC	430453 tax ID	*
[Ref.: #66792]	Marinobacter segnicrescens CGMCC 1.6489	2617270929	draft	JGI IMG/M	430453 tax ID	*

[Ref.: #32141]

GC-content

62.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Marinobacter segnicrescens CGMCC 1.6489 NCBI: GCA_900111555.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marinobacter segnicrescens CGMCC 1.6489 NCBI: GCA_900111555.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.494	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.576	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	82.515	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.547	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.893	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	88.393	no

Availability in culture collections External links

[Ref.: #32141]

Culture collection no.

LMG 23928, CGMCC 1.6489

[Ref.: #91844]

SI-ID 293209

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter nanhaiticus sp. nov., polycyclic aromatic hydrocarbon-degrading bacterium isolated from the sediment of the South China Sea.	Gao W, Cui Z, Li Q, Xu G, Jia X, Zheng L	Antonie Van Leeuwenhoek	10.1007/s10482-012-9830-z	2012	*
Phylogeny	Marinobacter lacisalsi sp. nov., a moderately halophilic bacterium isolated from the saline-wetland wildfowl reserve Fuente de Piedra in southern Spain.	Aguilera M, Jimenez-Pranteda ML, Kharroub K, Gonzalez-Paredes A, Durban JJ, Russell NJ, Ramos-Cormenzana A, Monteoliva-Sanchez M	Int J Syst Evol Microbiol	10.1099/ijs.0.007518-0	2009	*
Phylogeny	Marinobacter daqiaonensis sp. nov., a moderate halophile isolated from a Yellow Sea salt pond.	Qu L, Zhu F, Zhang J, Gao C, Sun X	Int J Syst Evol Microbiol	10.1099/ijs.0.028993-0	2011	*
Phylogeny	Marinobacter segnicrescens sp. nov., a moderate halophile isolated from benthic sediment of the South China Sea.	Guo B, Gu J, Ye YG, Tang YQ, Kida K, Wu XL	Int J Syst Evol Microbiol	10.1099/ijs.0.65030-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32141

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28385 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91844

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID293209.1 )

#28385

IJSEM 1970 2007 ( DOI 10.1099/ijs.0.65030-0 , PubMed 17766857 )

* These data were automatically processed and therefore are not curated

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Marinobacter segnicrescens CGMCC 1.6489

Marinobacter segnicrescens CGMCC 1.6489

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