Name: Alkalibacterium indicireducens A11
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134250

Type strain:

Species: Alkalibacterium indicireducens

Strain Designation: A11

Culture col. no.: JCM 14232, NCIMB 14253

Strain history: I. Yumoto A11.

NCBI tax ID(s): 398758 (species)

Special Collections

Section

Alkalibacterium indicireducens A11 is a facultative aerobe, Gram-negative, motile bacterium that was isolated from Indigo fermentation liquor.

Gram-negative
motile
rod-shaped
facultative aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Carnobacteriaceae*
	Genus	*Alkalibacterium*
	Species	**Alkalibacterium indicireducens**
	Full Scientific Name (LPSN)	Alkalibacterium indicireducens Yumoto et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32118]	Gram stain	negative

[Ref.: #32118]	Cell length	2.7 µm

[Ref.: #32118]	Cell width	0.8 µm

[Ref.: #32118]	Cell shape	rod-shaped

[Ref.: #32118]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32118]	growth	15-40 °C
[Ref.: #32118]	optimum	25 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #32118]			optimum	10.5
[Ref.: #32118]			growth	9-12.3

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32118]

Oxygen tolerance

facultative aerobe

[Ref.: #32118]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32118]		NaCl		growth	0-15	%
[Ref.: #32118]		NaCl		optimum	6	%

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32118]	Sample type/isolated from	Indigo fermentation liquor

[Ref.: #67770]	Sample type/isolated from	Polygonum indigo (Polygonum tinctorium Lour.) fermentation liquor obtained from Tokushima City
[Ref.: #67770]	Host species	Polygonum tinctorium
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Industrial production
#Condition	#Alkaline	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32118]	Alkalibacterium indicireducens gene for 16S ribosomal RNA, partial sequence, strain: A11	AB268549	1518	GenBank ENA	398758 tax ID

[Ref.: #32118]	GC-content	47-47.8 mol%
[Ref.: #67770]	GC-content	47.1 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #32118]

Culture collection no.

JCM 14232, NCIMB 14253

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alkalibacterium indicireducens sp. nov., an obligate alkaliphile that reduces indigo dye.	Yumoto I, Hirota K, Nodasaka Y, Tokiwa Y, Nakajima K	Int J Syst Evol Microbiol	10.1099/ijs.0.64995-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32118

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28363 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#28363

IJSEM 901 2008 ( DOI 10.1099/ijs.0.64995-0 , PubMed 18398191 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Alkalibacterium indicireducens in external resources:
SILVA
BRENDA
PANGAEA
GBIF