Name: Alkalibacterium indicireducens A11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134250

Type strain:

Species: Alkalibacterium indicireducens

Strain Designation: A11

Culture col. no.: JCM 14232, NCIMB 14253

Strain history: I. Yumoto A11.

NCBI tax ID(s): 398758 (species)

Section

Alkalibacterium indicireducens A11 is a facultative aerobe, Gram-negative, motile bacterium that was isolated from Indigo fermentation liquor.

Gram-negative
motile
rod-shaped
facultative aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Carnobacteriaceae*
	Genus	*Alkalibacterium*
	Species	**Alkalibacterium indicireducens**
	Full Scientific Name (LPSN)	Alkalibacterium indicireducens Yumoto et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32118]	Gram stain	negative

[Ref.: #32118]	Cell length	2.7 µm

[Ref.: #32118]	Cell width	0.8 µm

[Ref.: #32118]	Cell shape	rod-shaped

[Ref.: #32118]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32118]	growth	15-40 °C
[Ref.: #32118]	optimum	25 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #32118]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32118]			optimum	10.5
[Ref.: #32118]			growth	9-12.3

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32118]

Oxygen tolerance

facultative aerobe

[Ref.: #32118]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32118]		NaCl		growth	0-15	%
[Ref.: #32118]		NaCl		optimum	6	%

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32118]	Sample type/isolated from	Indigo fermentation liquor

[Ref.: #67770]	Sample type/isolated from	Polygonum indigo (Polygonum tinctorium Lour.) fermentation liquor obtained from Tokushima City
[Ref.: #67770]	Host species	Polygonum tinctorium
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Industrial production
#Condition	#Alkaline	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32118]	Alkalibacterium indicireducens gene for 16S ribosomal RNA, partial sequence, strain: A11	AB268549	1518	GenBank	398758 tax ID

[Ref.: #32118]	GC-content	47-47.8 mol%
[Ref.: #67770]	GC-content	47.1 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #32118]

Culture collection no.

JCM 14232, NCIMB 14253

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alkalibacterium indicireducens sp. nov., an obligate alkaliphile that reduces indigo dye.	Yumoto I, Hirota K, Nodasaka Y, Tokiwa Y, Nakajima K	Int J Syst Evol Microbiol	10.1099/ijs.0.64995-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32118

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28363 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#28363

IJSEM 901 2008 ( DOI 10.1099/ijs.0.64995-0 , PubMed 18398191 )

* These data were automatically processed and therefore are not curated

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