Name: Mariniflexile gromovii KCTC 12570
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134195

Type strain:

Species: Mariniflexile gromovii

Culture col. no.: KCTC 12570, LMG 22578, KMM 6038

Strain history: <- SB Kim, CNU <- OI Nedashkovskaya, KMM, Russia

NCBI tax ID(s): 362523 (species)

SI-ID 134396

LMG 22578, KCTC 12570

Section

Mariniflexile gromovii KCTC 12570 is a facultative aerobe, Gram-negative, motile bacterium that was isolated from sea urchin.

Gram-negative
motile
rod-shaped
facultative aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Mariniflexile*
	Species	**Mariniflexile gromovii**
	Full Scientific Name (LPSN)	Mariniflexile gromovii Nedashkovskaya et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31792]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.968

[Ref.: #31792]	Cell length	02-03 µm

[Ref.: #31792]	Cell width	0.4-0.5 µm

[Ref.: #31792]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31792]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #31792]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #31792]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31792]	growth	04-37 °C
[Ref.: #31792]	optimum	23-25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #67771]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #31792]			optimum	7
[Ref.: #31792]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31792]	Oxygen tolerance	facultative aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31792]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31792]		NaCl		growth	0-6	%

[Ref.: #31792]	Observation	aggregates in chains
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31792]	lactose ChEBI	+	carbon source
[Ref.: #31792]	mannose ChEBI	+	carbon source
[Ref.: #31792]	sucrose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #31792]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31792]	catalase	+	1.11.1.6
[Ref.: #31792]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31792]	Sample type/isolated from	sea urchin

[Ref.: #67771]	Sample type/isolated from	From sea urchin `Strongylocentrotus intermedius`
[Ref.: #67771]	Geographic location (country and/or sea, region)	Troitsa Bay, East Sea(the Sea of Japan)
[Ref.: #67771]	Country	International waters
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Echinodermata

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ312294 (>99% sequence identity) for Mariniflexile gromovii subclade from Microbeatlas

Aquatic Samples	127
Soil Samples	3
Animal Samples	2
Plant Samples
Total Samples	132

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31792]	Mariniflexile gromovii strain KMM 6038 16S ribosomal RNA gene, partial sequence	DQ312294	1423	GenBank	362523 tax ID
[Ref.: #67771]	Mariniflexile gromovii strain KCTC 12570 16S ribosomal RNA gene, partial sequence	MW922711	1502	ENA	362523 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Mariniflexile gromovii KCTC 12570	GCA_017814435	scaffold	GenBank	362523 tax ID
[Ref.: #66792]	Mariniflexile gromovii strain KCTC 12570	362523.3	wgs	PATRIC	362523 tax ID	*

[Ref.: #31792]

GC-content

35.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mariniflexile gromovii KCTC 12570 NCBI: GCA_017814435.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mariniflexile gromovii strain KCTC 12570 PATRIC: 362523.3
[Ref.: #69480]	gram-positive	no	97.509	yes
[Ref.: #69480]	anaerobic	no	99.757	yes
[Ref.: #69480]	halophile	no	83.709	no
[Ref.: #69480]	spore-forming	no	95.881	yes
[Ref.: #69480]	glucose-util	yes	86.059	no
[Ref.: #69480]	motile	no	89.401	no
[Ref.: #69480]	flagellated	no	94.612	yes
[Ref.: #69480]	thermophile	no	99.703	yes
[Ref.: #69480]	aerobic	yes	91.637	no
[Ref.: #69480]	glucose-ferment	no	87.001	no

Availability in culture collections External links

[Ref.: #31792]

Culture collection no.

KCTC 12570, LMG 22578, KMM 6038

[Ref.: #91790]

SI-ID 134396

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mariniflexile maritimum sp. nov., isolated from seawater of the South Sea in the Republic of Korea.	Ko SR, Le VV, Jin L, Lee SA, Ahn CY, Oh HM	Int J Syst Evol Microbiol	10.1099/ijsem.0.004925	2021	*
Phylogeny	Mariniflexile jejuense sp. nov., isolated from the junction between seawater and a freshwater spring, and emended description of the genus Mariniflexile.	Jung YT, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.042796-0	2012	*
Phylogeny	Mariniflexile aquimaris sp. nov., isolated from seawater, and emended description of the genus Mariniflexile Nedashkovskaya et al. 2006.	Jung YT, Kim JH, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.031492-0	2011	*
Phylogeny	Snuella sedimenti sp. nov., isolated from marine sediment.	Kim JH, Weerawongwiwat V, Yoon JH, Lee JS, Sukhoom A, Kim W	Arch Microbiol	10.1007/s00203-021-02528-8	2021	*
Phylogeny	Mariniflexile gromovii gen. nov., sp. nov., a gliding bacterium isolated from the sea urchin Strongylocentrotus intermedius.	Nedashkovskaya OI, Kim SB, Kwak J, Mikhailov VV, Bae KS	Int J Syst Evol Microbiol	10.1099/ijs.0.64293-0	2006	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31792

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28063 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91790

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134396.1 )

#28063

IJSEM 1635 2006 ( DOI 10.1099/ijs.0.64293-0 , PubMed 16825641 )

* These data were automatically processed and therefore are not curated

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Mariniflexile gromovii KCTC 12570

Mariniflexile gromovii strain KCTC 12570

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