Name: Helicobacter equorum EqF1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134194

Type strain:

Species: Helicobacter equorum

Strain Designation: EqF1

Culture col. no.: LMG 23362, CCUG 52199

NCBI tax ID(s): 361872 (species)

SI-ID 297221

CCUG 52199, LMG 23362

Special Collections

Section

Helicobacter equorum EqF1 is a microaerophile, Gram-negative, motile bacterium that was isolated from horse feces.

Gram-negative
motile
rod-shaped
microaerophile
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Helicobacteraceae*
	Genus	*Helicobacter*
	Species	**Helicobacter equorum**
	Full Scientific Name (LPSN)	Helicobacter equorum Moyaert et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31787]	Gram stain	negative

[Ref.: #31787]	Cell length	0.95 µm

[Ref.: #31787]	Cell width	0.3 µm

[Ref.: #31787]	Cell shape	rod-shaped

[Ref.: #31787]	Motility	yes

[Ref.: #59461]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #31787]			optimum	37 °C
[Ref.: #59461]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31787]	Oxygen tolerance	microaerophile
[Ref.: #59461]	Oxygen tolerance	microaerophile

[Ref.: #31787]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31787]		NaCl		growth	<1.5	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31787]		nitrate ChEBI	+	reduction

	Enzyme	Enzyme activity	EC number
[Ref.: #31787]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31787]	catalase	+	1.11.1.6
[Ref.: #31787]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31787]	Sample type/isolated from	horse feces

[Ref.: #59461]	Sample type/isolated from	Horse feces
[Ref.: #59461]	Geographic location (country and/or sea, region)	Merelbeke
[Ref.: #59461]	Country	Belgium
[Ref.: #59461]	Country ISO 3 Code	BEL
[Ref.: #59461]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Equidae (Horse)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31787]	Helicobacter equorum strain EqF1 16S ribosomal RNA gene, complete sequence	DQ307735	1454	GenBank ENA	361872 tax ID
[Ref.: #124043]	Helicobacter equorum partial 16S rRNA gene, type strain CCUG 52199T	AM998804	1468	GenBank ENA	361872 tax ID	*

[Ref.: #31787]

GC-content

38.5 mol%

Availability in culture collections External links

[Ref.: #31787]

Culture collection no.

LMG 23362, CCUG 52199

[Ref.: #91789]

SI-ID 297221

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Acute in vivo interactions of Helicobacter equorum with its equine host.	Moyaert H, Decostere A, Pasmans F, Baele M, Ceelen L, Smits K, Ducatelle R, Haesebrouck F	Equine Vet J	10.2746/042516407x206391	2007	*
Phylogeny	Helicobacter equorum sp. nov., a urease-negative Helicobacter species isolated from horse faeces.	Moyaert H, Decostere A, Vandamme P, Debruyne L, Mast J, Baele M, Ceelen L, Ducatelle R, Haesebrouck F	Int J Syst Evol Microbiol	10.1099/ijs.0.64279-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31787

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28059 (see below)

#59461 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52199

#91789

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297221.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#28059

IJSEM 213 2007 ( DOI 10.1099/ijs.0.64279-0 , PubMed 17267952 )

* These data were automatically processed and therefore are not curated

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