Pilibacter termitis (ATCC BAA-1030, CCUG 49613, CIP 109089)

Name: Pilibacter termitis (ATCC BAA-1030, CCUG 49613, CIP 109089)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134135

Type strain

Strain Designation TI-1

Culture col. no. ATCC BAA-1030 CCUG 49613 CIP 109089 TI-1

NCBI tax ID(s) 263852

Special Collections CCUG CIP Literature strains

Links

Pilibacter termitis TI-1 is an anaerobe, Gram-positive, rod-shaped prokaryote that was isolated from hindgut of termite.

Gram-positive rod-shaped anaerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 289866

ATCC BAA-1030,CCUG 49613,CIP 109089

@ref 20215

Last LPSN update 2026-02-09 11:32:07

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Enterococcaceae

Genus Pilibacter

Species Pilibacter termitis

Full scientific name Pilibacter termitis Higashiguchi et al. 2006

BacDive ID	Other strains from **Pilibacter termitis** (2)	Type strain
164299	P. termitis JCM 32571
164300	P. termitis JCM 32572

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
31434	positive	rod-shaped

Pigmentation

31434

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
31434	positive	growth	20-30
31434	positive	optimum	20-30
58629	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31434	anaerobe
58629	anaerobe

Spore formation

31434

Spore formationno

Observation

31434

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31434	4853 ChEBI	esculin	+	hydrolysis
31434	28757 ChEBI	fructose	+	carbon source
31434	28260 ChEBI	galactose	+	carbon source
31434	17234 ChEBI	glucose	+	carbon source
31434	37684 ChEBI	mannose	+	carbon source
31434	506227 ChEBI	N-acetylglucosamine	+	carbon source
31434	17814 ChEBI	salicin	+	carbon source
31434	30911 ChEBI	sorbitol	+	carbon source
31434	27082 ChEBI	trehalose	+	carbon source
31434	18222 ChEBI	xylose	+	carbon source

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	gluconeogenesis	100	8 of 8
66794	L-lactaldehyde degradation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	peptidoglycan biosynthesis	93.33	14 of 15
66794	vitamin B1 metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	valine metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	degradation of sugar alcohols	81.25	13 of 16
66794	Entner Doudoroff pathway	80	8 of 10
66794	glycine betaine biosynthesis	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	photosynthesis	78.57	11 of 14
66794	pyrimidine metabolism	77.78	35 of 45
66794	purine metabolism	76.6	72 of 94
66794	acetate fermentation	75	3 of 4
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	ketogluconate metabolism	75	6 of 8
66794	ppGpp biosynthesis	75	3 of 4
66794	degradation of hexoses	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	starch degradation	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	serine metabolism	66.67	6 of 9
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	NAD metabolism	66.67	12 of 18
66794	glycolysis	64.71	11 of 17
66794	d-xylose degradation	63.64	7 of 11
66794	isoleucine metabolism	62.5	5 of 8
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	methionine metabolism	61.54	16 of 26
66794	degradation of pentoses	60.71	17 of 28
66794	oxidative phosphorylation	58.24	53 of 91
66794	glutamate and glutamine metabolism	57.14	16 of 28
66794	propanol degradation	57.14	4 of 7
66794	allantoin degradation	55.56	5 of 9
66794	d-mannose degradation	55.56	5 of 9
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	non-pathway related	55.26	21 of 38
66794	proline metabolism	54.55	6 of 11
66794	tryptophan metabolism	52.63	20 of 38
66794	degradation of sugar acids	52	13 of 25
66794	citric acid cycle	50	7 of 14
66794	suberin monomers biosynthesis	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	glutathione metabolism	50	7 of 14
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	CMP-KDO biosynthesis	50	2 of 4
66794	tetrahydrofolate metabolism	50	7 of 14
66794	sulfopterin metabolism	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	propionate fermentation	50	5 of 10
66794	histidine metabolism	48.28	14 of 29
66794	leucine metabolism	46.15	6 of 13
66794	arginine metabolism	45.83	11 of 24
66794	metabolism of disaccharids	45.45	5 of 11
66794	vitamin B6 metabolism	45.45	5 of 11
66794	alanine metabolism	44.83	13 of 29
66794	cysteine metabolism	44.44	8 of 18
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	lysine metabolism	40.48	17 of 42
66794	glycine metabolism	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	cellulose degradation	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	urea cycle	38.46	5 of 13
66794	ascorbate metabolism	36.36	8 of 22
66794	tyrosine metabolism	35.71	5 of 14
66794	lipid metabolism	35.48	11 of 31
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	IAA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	flavin biosynthesis	33.33	5 of 15
66794	enterobactin biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	ubiquinone biosynthesis	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	sulfate reduction	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9
66794	heme metabolism	21.43	3 of 14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	-

Isolation

@ref	Sample type	Sampling date
31434	hindgut of termite
58629	Coptotermes formosanus	2000-09-14

Taxonmaps

69479

Global distribution of 16S sequence AY533171 (>99% sequence identity) for Pilibacter termitis subclade from Microbeatlas

Aquatic Samples	3
Soil Samples	7
Animal Samples	616
Plant Samples	3
Total Samples	629

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
124043	IMG-taxon 2585428141 annotated assembly for Pilibacter termitis ATCC BAA-1030	scaffold	GCA_900167335	2585428141	263852	57.17

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31434	Pilibacter termitis strain TI-1 16S ribosomal RNA gene, partial sequence	AY533171	1432		263852

GC content

31434

GC-content (mol%)37.8

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Effects of caste on the expression of genes associated with septic injury and xenobiotic exposure in the Formosan subterranean termite.	Husseneder C, Simms DM.	PLoS One	10.1371/journal.pone.0105582	2014
Phylogeny	Pilibacter termitis gen. nov., sp. nov., a lactic acid bacterium from the hindgut of the Formosan subterranean termite (Coptotermes formosanus).	Higashiguchi DT, Husseneder C, Grace JK, Berestecky JM	Int J Syst Evol Microbiol	10.1099/ijs.0.63543-0	2006

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27740	IJSEM 15 2006 ( DOI 10.1099/ijs.0.63543-0 , PubMed 16403859 )
#31434	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27740
#58629	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 49613
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pilibacter termitis (ATCC BAA-1030, CCUG 49613, CIP 109089)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900167335

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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