Zobellia russellii (LMG 22071, CCUG 47084, KMM 3677)

Name: Zobellia russellii (LMG 22071, CCUG 47084, KMM 3677)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134091

Type strain

Culture col. no. LMG 22071 CCUG 47084 KMM 3677 CIP 108564

NCBI tax ID(s) 248907

Special Collections CCUG CIP Literature strains

History CIP <- 2004, CCUG <- 2002, KMM

Links

Zobellia russellii LMG 22071 is an aerobe, Gram-negative, motile bacterium that was isolated from Green alga,Acrosiphonia sonderi.

Gram-negative motile aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 127802

LMG 22071,CCUG 47084,CIP 108564,CECT 7505

@ref 20215

Last LPSN update 2026-02-09 11:32:06

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Zobellia

Species Zobellia russellii

Full scientific name Zobellia russellii Nedashkovskaya et al. 2004

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Flagellum arrangement	Confidence	Cell shape
31228	negative	1.3 µm	0.45 µm	gliding
125438					91.75
125438	negative				98.5
125439	negative				99.8
122318	negative					rod-shaped

Colony morphology

Pigmentation

@ref	Production	Name
31228
122318		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
38282	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
122318	CIP Medium 13			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
31228	positive	growth	04-38
31228	positive	optimum	26.5
38282	positive	growth	25
57502	positive	growth	25-28
122318	positive	growth	5-37
122318	negative	growth	41
122318	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31228	aerobe
57502	aerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31228	NaCl	positive	growth	01-10 %
31228	NaCl	positive	optimum	2.5 %
122318	NaCl		growth	0 %
122318	NaCl		growth	2 %
122318	NaCl		growth	4 %
122318	NaCl		growth	6 %
122318	NaCl		growth	8 %
122318	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31228	22599 ChEBI	arabinose	+	carbon source
31228	17057 ChEBI	cellobiose	+	carbon source
122318	4853 ChEBI	esculin	-	hydrolysis
31228	33984 ChEBI	fucose	+	carbon source
31228	17234 ChEBI	glucose	+	carbon source
122318	606565 ChEBI	hippurate	-	hydrolysis
31228	17716 ChEBI	lactose	+	carbon source
122318	15792 ChEBI	malonate	-	assimilation
31228	17306 ChEBI	maltose	+	carbon source
31228	29864 ChEBI	mannitol	+	carbon source
31228	37684 ChEBI	mannose	+	carbon source
31228	17632 ChEBI	nitrate	+	reduction
122318	17632 ChEBI	nitrate	+	reduction
122318	17632 ChEBI	nitrate	-	respiration
122318	16301 ChEBI	nitrite	-	reduction
31228	26546 ChEBI	rhamnose	+	carbon source
31228	17992 ChEBI	sucrose	+	carbon source
31228	53424 ChEBI	tween 20	+	carbon source
31228	53423 ChEBI	tween 40	+	carbon source
31228	53426 ChEBI	tween 80	+	carbon source
31228	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122318	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
122318	15688 ChEBI	acetoin	-
122318	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122318	alcohol dehydrogenase	-	1.1.1.1
31228	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	+	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
122318	amylase	+
68382	beta-galactosidase	+	3.2.1.23	from API zym
122318	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122318	caseinase	+	3.4.21.50
31228	catalase	+	1.11.1.6
122318	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
31228	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
122318	gamma-glutamyltransferase	+	2.3.2.2
31228	gelatinase	+
122318	gelatinase	+/-
122318	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
122318	lipase	-
68382	lipase (C 14)	-		from API zym
122318	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122318	ornithine decarboxylase	-	4.1.1.17
122318	oxidase	+
122318	phenylalanine ammonia-lyase	-	4.3.1.24
122318	protease	+
68382	trypsin	+	3.4.21.4	from API zym
122318	tryptophan deaminase	-
122318	tween esterase	+
122318	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122318	-	+	+	+	-	+	+	+	+	-	+	+	+	+	-	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Algae	#Green algae

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Isolation date
57502	Green alga,Acrosiphonia sonderi	2000-06-01	Sea of Japan	Pacific Ocean
122318	Green alga, Accrosiphonia sonderi		Pacific Ocean	Sea of Japan	2000

Taxonmaps

69479

Global distribution of 16S sequence AB121976 (>99% sequence identity) for Zobellia russellii from Microbeatlas

Aquatic Samples	382
Soil Samples	30
Animal Samples	83
Plant Samples	4
Total Samples	499

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
122318	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1872856v1 assembly for Zobellia russellii KMM 3677	contig	GCA_018728565	248907.4	8001908298	248907	70.06

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31228	Zobellia russellii gene for 16S ribosomal RNA, partial sequence	AB121976	1408		248907
124043	Zobellia russellii strain KMM 3677 16S ribosomal RNA gene, partial sequence.	OQ626009	1348		248907

GC content

31228

GC-content (mol%)38.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Zobellia russellii KMM 3677
NCBI: GCA_018728565

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.10	no
125439	motility	BacteriaNetⓘ	no	65.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	87.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Zobellia russellii strain KMM 3677
PATRIC: 248907.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	97.82	no
125438	spore-forming	spore-formingⓘ	no	88.24	no
125438	thermophilic	thermophileⓘ	no	100.00	yes
125438	aerobic	aerobicⓘ	yes	86.59	no
125438	flagellated	motile2+ⓘ	no	91.75	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Unraveling the Diverse Profile of N-Acyl Homoserine Lactone Signals and Their Role in the Regulation of Biofilm Formation in Porphyra haitanensis-Associated Pseudoalteromonas galatheae.	Aslam M, Pei P, Ye P, Li T, Liang H, Zhang Z, Ke X, Chen W, Du H.	Microorganisms	10.3390/microorganisms11092228	2023
Pathogenicity	Shell Disease Syndrome Is Associated with Reduced and Shifted Epibacterial Diversity on the Carapace of the Crustacean Cancer pagurus.	Bergen N, Kramer P, Romberg J, Wichels A, Gerlach G, Brinkhoff T.	Microbiol Spectr	10.1128/spectrum.03419-22	2022
Genetics	Genome-Wide Analysis of PL7 Alginate Lyases in the Genus Zobellia.	Chernysheva N, Bystritskaya E, Likhatskaya G, Nedashkovskaya O, Isaeva M.	Molecules	10.3390/molecules26082387	2021
Phylogeny	Zobellia amurskyensis sp. nov., Zobellia laminariae sp. nov. and Zobellia russellii sp. nov., novel marine bacteria of the family Flavobacteriaceae.	Nedashkovskaya OI, Suzuki M, Vancanneyt M, Cleenwerck I, Lysenko AM, Mikhailov VV, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.63091-0	2004

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27554	IJSEM 1643 2004 ( DOI 10.1099/ijs.0.63091-0 , PubMed 15388723 )
#31228	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27554
#38282	; Curators of the CIP;
#57502	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47084
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122318	Collection of Institut Pasteur ; Curators of the CIP; CIP 108564
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Zobellia russellii (LMG 22071, CCUG 47084, KMM 3677)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_018728565

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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