Name: Qipengyuania aquimaris SW110
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134092

Type strain:

Species: Qipengyuania aquimaris

Strain Designation: SW110, SW-110

Culture col. no.: KCCM 41818, JCM 12189, CGMCC 1.8484, CIP 108636

Strain history: CIP <- 2005, JCM <- 2003, J.H. Yoon: strain SW-110

NCBI tax ID(s): 255984 (species)

SI-ID 134419

JCM 12189, CIP 108636

Section

Qipengyuania aquimaris SW110 is a Gram-negative, rod-shaped bacterium that was isolated from Seawater of a tidal flat of the Yellow Sea.

Gram-negative
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Qipengyuania*
	Species	**Qipengyuania aquimaris**
	Full Scientific Name (LPSN)	Qipengyuania aquimaris (Yoon et al. 2004) Xu et al. 2020

Synonym

Erythrobacter aquimaris

Information on morphological and physiological properties Morphology

[Ref.: #31231]	Gram stain	negative
[Ref.: #116459]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.981

[Ref.: #31231]	Cell length	3 µm

[Ref.: #31231]	Cell width	0.75 µm

[Ref.: #31231]	Cell shape	rod-shaped
[Ref.: #116459]	Cell shape	rod-shaped

[Ref.: #31231]	Motility	no
[Ref.: #116459]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #40042]

Culture medium

Marine agar (MA)

[Ref.: #40042]

Culture medium growth

[Ref.: #40042]

Culture medium composition

expand / minimize

[Ref.: #116459]

Culture medium

CIP Medium 13

[Ref.: #116459]

Culture medium growth

[Ref.: #116459]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #31231]		growth	10-40 °C
[Ref.: #31231]		optimum	25 °C
[Ref.: #40042]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #116459]		growth	15-37 °C
[Ref.: #116459]	no	growth	5 °C
[Ref.: #116459]	no	growth	41 °C
[Ref.: #116459]	no	growth	45 °C

[Ref.: #31231]	Temperature range	mesophilic
[Ref.: #40042]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #116459]	Temperature range	psychrophilic
[Ref.: #116459]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #31231]			optimum	7
[Ref.: #31231]			growth	6.5-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31231]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.985

	Salt		Salt conc.
[Ref.: #31231]	NaCl	growth	01-10	%
[Ref.: #31231]	NaCl	optimum	2.5	%
[Ref.: #116459]	NaCl	growth	0-10	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31231]	acetate ChEBI	+	carbon source
[Ref.: #116459]	citrate ChEBI	-	carbon source
[Ref.: #31231]	esculin ChEBI	+	hydrolysis
[Ref.: #116459]	esculin ChEBI	-	hydrolysis
[Ref.: #31231]	glucose ChEBI	+	carbon source
[Ref.: #116459]	hippurate ChEBI	+	hydrolysis
[Ref.: #31231]	malate ChEBI	+	carbon source
[Ref.: #116459]	malonate ChEBI	-	assimilation
[Ref.: #116459]	nitrate ChEBI	-	builds gas from
[Ref.: #116459]	nitrate ChEBI	-	reduction
[Ref.: #116459]	nitrite ChEBI	-	builds gas from
[Ref.: #116459]	nitrite ChEBI	-	reduction
[Ref.: #31231]	pyruvate ChEBI	+	carbon source
[Ref.: #31231]	succinate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #116459]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #116459]		acetoin ChEBI	-
[Ref.: #116459]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116459]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116459]	amylase	-
[Ref.: #116459]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116459]	caseinase	-	3.4.21.50
[Ref.: #31231]	catalase	+	1.11.1.6
[Ref.: #116459]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #31231]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116459]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #116459]	gelatinase	+/-
[Ref.: #116459]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116459]	lipase	-
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #116459]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116459]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116459]	oxidase	+
[Ref.: #116459]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #116459]	tryptophan deaminase	-
[Ref.: #116459]	tween esterase	+
[Ref.: #116459]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116459]	11348	-	+	+	+	+	+	+	+	+	-	+	+	-	+	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Seawater of a tidal flat of the Yellow Sea
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #116459]	Sample type/isolated from	Environment, Sea water
[Ref.: #116459]	Geographic location (country and/or sea, region)	Yellow sea
[Ref.: #116459]	Country	Republic of Korea
[Ref.: #116459]	Country ISO 3 Code	KOR
[Ref.: #116459]	Continent	Asia
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #116459]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31231]	Erythrobacter aquimaris strain SW-110 16S ribosomal RNA gene, partial sequence	AY461441	1444	GenBank	255984 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Qipengyuania aquimaris JCM 12189	GCA_009827445	scaffold	GenBank	255984 tax ID
[Ref.: #66792]	Erythrobacter aquimaris strain JCM 12189	255984.3	wgs	PATRIC	255984 tax ID	*

[Ref.: #31231]	GC-content	62.6 mol%
[Ref.: #67770]	GC-content	62.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	61.8 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Qipengyuania aquimaris JCM 12189 NCBI: GCA_009827445.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Erythrobacter aquimaris strain JCM 12189 PATRIC: 255984.3
[Ref.: #69480]	motile	no	87.169	no
[Ref.: #69480]	gram-positive	no	97.643	yes
[Ref.: #69480]	anaerobic	no	99.098	no
[Ref.: #69480]	aerobic	yes	92.869	no
[Ref.: #69480]	halophile	no	82.918	no
[Ref.: #69480]	spore-forming	no	95.848	yes
[Ref.: #69480]	glucose-util	yes	88.403	yes
[Ref.: #69480]	flagellated	no	95.91	yes
[Ref.: #69480]	thermophile	no	95.361	no
[Ref.: #69480]	glucose-ferment	no	90.926	no

Availability in culture collections External links

[Ref.: #31231]

Culture collection no.

KCCM 41818, JCM 12189, CGMCC 1.8484, CIP 108636

[Ref.: #91701]

SI-ID 134419

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31231

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27556 (see below)

#40042 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91701

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134419.1 )

#116459 Collection of Institut Pasteur ; Curators of the CIP; CIP 108636

#27556

IJSEM 1981 2004 ( DOI 10.1099/ijs.0.63100-0 , PubMed 15545421 )

* These data were automatically processed and therefore are not curated

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Qipengyuania aquimaris JCM 12189

Erythrobacter aquimaris strain JCM 12189

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