Name: Flavobacterium limnosediminis JC2902
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134073

Type strain:

Species: Flavobacterium limnosediminis

Strain Designation: JC2902

Culture col. no.: KACC 16937, JCM 18661

Strain history: J. Chun JC2902.

NCBI tax ID(s): 1401027 (species)

Special Collections

Section

Flavobacterium limnosediminis JC2902 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from freshwater sediment .

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium limnosediminis**
	Full Scientific Name (LPSN)	Flavobacterium limnosediminis Lee et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31175]	Gram stain	negative

[Ref.: #31175]	Cell shape	rod-shaped

[Ref.: #31175]	Motility	no

[Ref.: #31175]

Pigment production

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #31175]			growth	10-37 °C
[Ref.: #67770]			growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31175]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31175]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31175]		NaCl		growth	0-1	%

	Enzyme	Enzyme activity	EC number
[Ref.: #31175]	acid phosphatase	+	3.1.3.2
[Ref.: #31175]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31175]	catalase	+	1.11.1.6
[Ref.: #31175]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31175]	Sample type/isolated from	freshwater sediment (river, lake, pond)

[Ref.: #67770]	Sample type/isolated from	Lake sediment from Gochang
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ928688 (>99% sequence identity) for Flavobacterium limnosediminis from Microbeatlas

Aquatic Samples	1021
Soil Samples	677
Animal Samples	90
Plant Samples	62
Total Samples	1850

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31175]	Flavobacterium limnosediminis JC2902 16S ribosomal RNA gene, partial sequence	JQ928688	1373	GenBank ENA	1341181 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Flavobacterium limnosediminis JC2902	GCA_000498535	contig	GenBank ENA	1341181 tax ID
[Ref.: #66792]	Flavobacterium limnosediminis JC2902	2571042671	draft	JGI IMG/M	1341181 tax ID	*

[Ref.: #31175]	GC-content	38.5 mol%
[Ref.: #67770]	GC-content	38.5 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #31175]

Culture collection no.

KACC 16937, JCM 18661

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium limnosediminis sp. nov., isolated from sediment of a freshwater lake.	Lee K, Park SC, Yi H, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.055566-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31175

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27502 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27502

IJSEM 4784 2013 ( DOI 10.1099/ijs.0.055566-0 , PubMed 23996833 )

* These data were automatically processed and therefore are not curated

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