Name: Imperialibacter roseus P4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134040

Type strain:

Species: Imperialibacter roseus

Strain Designation: P4

Culture col. no.: CICC 10659, KCTC 32399, DSM 104961

Strain history: <- Hui Wang, Yantai Inst. of Costal Zone Research, CAS, Yantai, China

NCBI tax ID(s): 1324217 (species)

SI-ID 407899

DSM 104961

Section

Imperialibacter roseus P4 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from freshwater .

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Flammeovirgaceae*
	Genus	*Imperialibacter*
	Species	**Imperialibacter roseus**
	Full Scientific Name (LPSN)	Imperialibacter roseus Wang et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31119]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #31119]	Cell length	4 µm

[Ref.: #31119]	Cell width	0.4 µm

[Ref.: #31119]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31119]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64753]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #64753]

Culture medium growth

[Ref.: #64753]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64753]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #31119]	growth	10-37 °C
[Ref.: #64753]	growth	28 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #64753]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31119]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31119]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31119]		NaCl		optimum	2	%

[Ref.: #31119]	Observation	aggregates in clumps
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31119]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #31119]	fructose ChEBI	+	carbon source
[Ref.: #31119]	fucose ChEBI	+	carbon source
[Ref.: #31119]	glucose ChEBI	+	carbon source
[Ref.: #31119]	mannose ChEBI	+	carbon source
[Ref.: #31119]	melibiose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31119]	Sample type/isolated from	freshwater (river, lake, pond)

[Ref.: #67771]	Sample type/isolated from	From Permian groundwater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Pecos Cenozoic Trough in Imperial, Texas
[Ref.: #67771]	Country	USA
[Ref.: #67771]	Country ISO 3 Code	USA
[Ref.: #67771]	Continent	North America
[Ref.: #67771]	Geographic location	31.2714°/-102.6800°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC800928 (>99% sequence identity) for Imperialibacter roseus subclade from Microbeatlas

Aquatic Samples	1420
Soil Samples	469
Animal Samples	94
Plant Samples	30
Total Samples	2013

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64753]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31119]	Imperialibacter roseus 16S ribosomal RNA gene, partial sequence	KC800928	1420	GenBank	1324217 tax ID

[Ref.: #31119]

GC-content

45.2 mol%

Availability in culture collections External links

[Ref.: #64753]

Culture collection no.

CICC 10659, KCTC 32399, DSM 104961

[Ref.: #91681]

SI-ID 407899

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Imperialibacter roseus gen. nov., sp. nov., a novel bacterium of the family Flammeovirgaceae isolated from Permian groundwater.	Wang H, Li J, Zheng T, Hill RT, Hu X	Int J Syst Evol Microbiol	10.1099/ijs.0.052662-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31119

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27448 (see below)

#64753

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104961

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91681

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407899.1 )

#27448

IJSEM 4136 2013 ( DOI 10.1099/ijs.0.052662-0 , PubMed 23749281 )

* These data were automatically processed and therefore are not curated

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