Name: Kordia antarctica KCTC 32292
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134041

Type strain:

Species: Kordia antarctica

Culture col. no.: KCTC 32292, NBRC 109401, IMCC 3317

Strain history: <- JC Cho, Inha Univ.

NCBI tax ID(s): 1218801 (species)

Section

Kordia antarctica KCTC 32292 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from From seawater.

Gram-negative
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Kordia*
	Species	**Kordia antarctica**
	Full Scientific Name (LPSN)	Kordia antarctica Baek et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31122]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #31122]	Cell length	2.95 µm

[Ref.: #31122]	Cell width	0.7 µm

[Ref.: #31122]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31122]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #31122]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31122]	growth	04-30 °C
[Ref.: #31122]	optimum	20 °C
[Ref.: #67771]	growth	15 °C

[Ref.: #31122]	Temperature range	psychrophilic
[Ref.: #67771]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #31122]			optimum	8
[Ref.: #31122]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31122]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31122]		NaCl		growth	0.5-5.0	%
[Ref.: #31122]		NaCl		optimum	2.5	%

[Ref.: #31122]	Observation	aggregates in clumps
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31122]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #31122]	cellobiose ChEBI	+	carbon source
[Ref.: #31122]	citrate ChEBI	+	carbon source
[Ref.: #31122]	fucose ChEBI	+	carbon source
[Ref.: #31122]	gluconate ChEBI	+	carbon source
[Ref.: #31122]	L-arabitol ChEBI	+	carbon source
[Ref.: #31122]	lactose ChEBI	+	carbon source
[Ref.: #31122]	maltose ChEBI	+	carbon source
[Ref.: #31122]	melibiose ChEBI	+	carbon source
[Ref.: #31122]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31122]	raffinose ChEBI	+	carbon source
[Ref.: #31122]	sucrose ChEBI	+	carbon source
[Ref.: #31122]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31122]		alkaline phosphatase	+	3.1.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	off the coast of King George Island, Weaver Peninsula, western Antarctica(62Â°14â€²S 58Â°47â€²W)
[Ref.: #67771]	Country	Antarctica
[Ref.: #67771]	Country ISO 3 Code	ATA
[Ref.: #67771]	Continent	Australia and Oceania
[Ref.: #67771]	Geographic location	-62.2333°/-58.7833°

[Ref.: #31122]	Sample type/isolated from	seawater
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX456458 (>99% sequence identity) for Kordia antarctica subclade from Microbeatlas

Aquatic Samples	58
Soil Samples	4
Animal Samples	2
Plant Samples	1
Total Samples	65

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31122]	Kordia antarctica strain IMCC3317 16S ribosomal RNA gene, partial sequence	JX456458	1416	GenBank	1218801 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kordia antarctica strain IMCC3317	1218801.3	complete	PATRIC	1218801 tax ID	*

[Ref.: #31122]

GC-content

35.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kordia antarctica strain IMCC3317 PATRIC: 1218801.3
[Ref.: #69480]	motile	no	89.711	yes
[Ref.: #69480]	gram-positive	no	97.225	yes
[Ref.: #69480]	anaerobic	no	99.409	no
[Ref.: #69480]	aerobic	yes	87.678	yes
[Ref.: #69480]	halophile	no	78.098	no
[Ref.: #69480]	spore-forming	no	94.233	no
[Ref.: #69480]	thermophile	no	99.656	yes
[Ref.: #69480]	glucose-util	yes	79.98	no
[Ref.: #69480]	flagellated	no	94.979	yes
[Ref.: #69480]	glucose-ferment	no	88.479	no

Availability in culture collections External links

[Ref.: #31122]

Culture collection no.

KCTC 32292, NBRC 109401, IMCC 3317

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kordia antarctica sp. nov., isolated from Antarctic seawater.	Baek K, Choi A, Kang I, Lee K, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.052738-0	2013	*
Genetics	Genome characteristics of Kordia antarctica IMCC3317(T) and comparative genome analysis of the genus Kordia.	Lim Y, Kang I, Cho JC	Sci Rep	10.1038/s41598-020-71328-9	2020	*
Phylogeny	Kordiaulvae sp. nov., a bacterium isolated from the surface of green marine algae Ulva sp.	Qi F, Huang Z, Lai Q, Li D, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001098	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31122

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27451 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#27451

IJSEM 3617 2013 ( DOI 10.1099/ijs.0.052738-0 , PubMed 23606478 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Kordia antarctica in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Kordia antarctica strain IMCC3317

Change proposal

Change proposal