Name: Gracilimonas rosea CL-KR2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134035

Type strain:

Species: Gracilimonas rosea

Strain Designation: CL-KR2

Culture col. no.: KCCM 90206, JCM 18898

Strain history: B. C. Cho CL-KR2.

NCBI tax ID(s): 1309792 (species)

Section

Gracilimonas rosea CL-KR2 is an aerobe, spore-forming, Gram-negative bacterium that was isolated from seawater.

Gram-negative
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Balneolota*
	Class	*Balneolia*
	Order	*Balneolales*
	Family	*Balneolaceae*
	Genus	*Gracilimonas*
	Species	**Gracilimonas rosea**
	Full Scientific Name (LPSN)	Gracilimonas rosea Cho et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31109]	Gram stain	negative

[Ref.: #31109]	Cell length	2.7 µm

[Ref.: #31109]	Cell width	0.3 µm

[Ref.: #31109]	Cell shape	rod-shaped

[Ref.: #31109]	Motility	no

[Ref.: #31109]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31109]	growth	15-40 °C
[Ref.: #31109]	optimum	35 °C
[Ref.: #67770]	growth	35 °C

[Ref.: #31109]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31109]			optimum	7.5
[Ref.: #31109]			growth	6.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31109]

Oxygen tolerance

aerobe

[Ref.: #31109]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31109]		NaCl		growth	01-20	%
[Ref.: #31109]		NaCl		optimum	4.25	%

[Ref.: #31109]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31109]	arabinose ChEBI	+	carbon source
[Ref.: #31109]	aspartate ChEBI	+	carbon source
[Ref.: #31109]	esculin ChEBI	+	hydrolysis
[Ref.: #31109]	fructose ChEBI	+	carbon source
[Ref.: #31109]	glucose ChEBI	+	carbon source
[Ref.: #31109]	glycerol ChEBI	+	carbon source
[Ref.: #31109]	mannitol ChEBI	+	carbon source
[Ref.: #31109]	mannose ChEBI	+	carbon source
[Ref.: #31109]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31109]	proline ChEBI	+	carbon source
[Ref.: #31109]	pyruvate ChEBI	+	carbon source
[Ref.: #31109]	raffinose ChEBI	+	carbon source
[Ref.: #31109]	sucrose ChEBI	+	carbon source
[Ref.: #31109]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31109]	acid phosphatase	+	3.1.3.2
[Ref.: #31109]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31109]	catalase	+	1.11.1.6
[Ref.: #31109]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31109]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31109]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Tropical seawater near Kosrae, an island in the Federated States of Micronesia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC686334 (>99% sequence identity) for Gracilimonas rosea subclade from Microbeatlas

Aquatic Samples	216
Soil Samples	21
Animal Samples	4
Plant Samples	2
Total Samples	243

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31109]	Gracilimonas rosea strain CL-KR2 16S ribosomal RNA gene, partial sequence	KC686334	1458	GenBank	1309792 tax ID

[Ref.: #31109]	GC-content	43.2 mol%
[Ref.: #67770]	GC-content	43.2 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #31109]

Culture collection no.

KCCM 90206, JCM 18898

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gracilimonas amylolytica sp. nov., isolated from deep-sea sediment.	Wu YH, Yan J, Fang C, Huo YY, Ma WL, Zhang DM, Wang CS, Xu XW	Int J Syst Evol Microbiol	10.1099/ijsem.0.002734	2018	*
Phylogeny	Gracilimonas halophila sp. nov., isolated from a marine solar saltern.	Lu DC, Xia J, Dunlap CA, Rooney AP, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002093	2017	*
Phylogeny	Rhodohalobacter halophilus gen. nov., sp. nov., a moderately halophilic member of the family Balneolaceae.	Xia J, Xie ZH, Dunlap CA, Rooney AP, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001806	2017	*
Phylogeny	Soortia roseihalophila gen. nov., sp. nov., a new taxon in the order Balneolales isolated from a travertine spring, and description of Soortiaceae fam. nov.	Amoozegar MA, Khansha J, Mehrshad M, Shahzadeh Fazeli SA, Ramezani M, de la Haba RR, Sanchez-Porro C, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijsem.0.001583	2017	*
Phylogeny	Gracilimonas rosea sp. nov., isolated from tropical seawater, and emended description of the genus Gracilimonas.	Cho Y, Chung H, Jang GI, Choi DH, Noh JH, Cho BC	Int J Syst Evol Microbiol	10.1099/ijs.0.052340-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31109

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27438 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27438

IJSEM 4006 2013 ( DOI 10.1099/ijs.0.052340-0 , PubMed 23710056 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Gracilimonas rosea in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF