Strain identifier

BacDive ID: 134035

Type strain: Yes

Species: Gracilimonas rosea

Strain Designation: CL-KR2

Strain history: B. C. Cho CL-KR2.

NCBI tax ID(s): 1309792 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9 (current version):
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 9 (current version)

General

@ref: 31109

BacDive-ID: 134035

keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-negative, rod-shaped

description: Gracilimonas rosea CL-KR2 is an aerobe, spore-forming, Gram-negative bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 1309792
  • Matching level: species

strain history

  • @ref: 67770
  • history: B. C. Cho CL-KR2.

doi: 10.13145/bacdive134035.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/balneolota
  • domain: Bacteria
  • phylum: Balneolota
  • class: Balneolia
  • order: Balneolales
  • family: Balneolaceae
  • genus: Gracilimonas
  • species: Gracilimonas rosea
  • full scientific name: Gracilimonas rosea Cho et al. 2013

@ref: 31109

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Balneolales

family: Balneolaceae

genus: Gracilimonas

species: Gracilimonas rosea

strain designation: CL-KR2

type strain: yes

Morphology

cell morphology

  • @ref: 31109
  • gram stain: negative
  • cell length: 2.7 µm
  • cell width: 0.3 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 31109
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperature
31109positivegrowth15-40
31109positiveoptimum35
67770positivegrowth35

culture pH

@refabilitytypepHPH range
31109positivegrowth6.5-9.0alkaliphile
31109positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31109
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31109
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
31109NaClpositivegrowth01-20 %
31109NaClpositiveoptimum4.25 %

observation

  • @ref: 31109
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3110922599arabinose+carbon source
3110935391aspartate+carbon source
3110928757fructose+carbon source
3110917234glucose+carbon source
3110917754glycerol+carbon source
3110929864mannitol+carbon source
3110937684mannose+carbon source
31109506227N-acetylglucosamine+carbon source
3110926271proline+carbon source
3110915361pyruvate+carbon source
3110916634raffinose+carbon source
3110917992sucrose+carbon source
3110927082trehalose+carbon source
311094853esculin+hydrolysis

enzymes

@refvalueactivityec
31109acid phosphatase+3.1.3.2
31109alkaline phosphatase+3.1.3.1
31109catalase+1.11.1.6
31109gelatinase+
31109cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample type
31109seawater
67770Tropical seawater near Kosrae, an island in the Federated States of Micronesia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_53244.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_471;96_3029;97_29840;98_38137;99_53244&stattab=map
  • Last taxonomy: Gracilimonas rosea subclade
  • 16S sequence: KC686334
  • Sequence Identity:
  • Total samples: 243
  • soil counts: 21
  • aquatic counts: 216
  • animal counts: 4
  • plant counts: 2

Sequence information

16S sequences

  • @ref: 31109
  • description: Gracilimonas rosea strain CL-KR2 16S ribosomal RNA gene, partial sequence
  • accession: KC686334
  • length: 1458
  • database: nuccore
  • NCBI tax ID: 1309792

GC content

@refGC-contentmethod
3110943.2
6777043.2high performance liquid chromatography (HPLC)

External links

@ref: 31109

culture collection no.: KCCM 90206, JCM 18898

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23710056Gracilimonas rosea sp. nov., isolated from tropical seawater, and emended description of the genus Gracilimonas.Cho Y, Chung H, Jang GI, Choi DH, Noh JH, Cho BCInt J Syst Evol Microbiol10.1099/ijs.0.052340-02013Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Micronesia, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, Water MicrobiologyGenetics
Phylogeny27902267Soortia roseihalophila gen. nov., sp. nov., a new taxon in the order Balneolales isolated from a travertine spring, and description of Soortiaceae fam. nov.Amoozegar MA, Khansha J, Mehrshad M, Shahzadeh Fazeli SA, Ramezani M, de la Haba RR, Sanchez-Porro C, Ventosa AInt J Syst Evol Microbiol10.1099/ijsem.0.0015832017Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Iran, Natural Springs/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny28109207Rhodohalobacter halophilus gen. nov., sp. nov., a moderately halophilic member of the family Balneolaceae.Xia J, Xie ZH, Dunlap CA, Rooney AP, Du ZJInt J Syst Evol Microbiol10.1099/ijsem.0.0018062017Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, *Water MicrobiologyTranscriptome
Phylogeny28829029Gracilimonas halophila sp. nov., isolated from a marine solar saltern.Lu DC, Xia J, Dunlap CA, Rooney AP, Du ZJInt J Syst Evol Microbiol10.1099/ijsem.0.0020932017Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, *Water MicrobiologyTranscriptome
Phylogeny29611802Gracilimonas amylolytica sp. nov., isolated from deep-sea sediment.Wu YH, Yan J, Fang C, Huo YY, Ma WL, Zhang DM, Wang CS, Xu XWInt J Syst Evol Microbiol10.1099/ijsem.0.0027342018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Gram-Negative Aerobic Rods and Cocci/*classification/genetics/isolation & purification, Pacific Ocean, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31109Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172743828776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/