Algibacter agarilyticus (KCTC 23857, JCM 18275, KYW563)

Name: Algibacter agarilyticus (KCTC 23857, JCM 18275, KYW563)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134021

Type strain

Strain Designation KYW563

Culture col. no. KCTC 23857 JCM 18275 KYW563

NCBI tax ID(s) 1109739

Special Collections JCM KCTC Literature strains

History C. N. Seong KYW563. <- CN Seong, Sunchon Natl. Univ., Korea

Links

Algibacter agarilyticus KYW563 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from seawater.

Gram-negative rod-shaped aerobe 16S sequence

Name and taxonomic classification

SI-ID 287871

KCTC 23857,JCM 18275

@ref 20215

Last LPSN update 2026-02-09 11:32:05

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Algibacter

Species Algibacter agarilyticus

Full scientific name Algibacter agarilyticus Park et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
31072	negative	0.9 µm	0.35 µm	rod-shaped
67771				rod-shaped
67771	negative

Pigmentation

31072

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
31072	positive	growth	10-30
31072	positive	optimum	25	mesophilic
67770	positive	growth	25	mesophilic
67771	positive	growth	25	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31072	positive	optimum	7.5
31072	positive	growth	06-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31072	aerobe
67771	aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31072	NaCl	positive	growth	01-03 %
31072	NaCl	positive	optimum	2 %

Observation

@ref	Observation
31072	aggregates in clumps
67771	quinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31072	4853 ChEBI	esculin	+	hydrolysis
31072	17632 ChEBI	nitrate	+	reduction

Enzymes

@ref	Value	Activity	Ec
31072	alkaline phosphatase	+	3.1.3.1
31072	catalase	+	1.11.1.6
31072	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
31072	seawater
67770	Seawater from Gwangyang Bay,(34° 51' N 127° 47' E)		Republic of Korea	KOR	Asia	34.85	127.783 34.85/127.783
67771	From seawater	Gwangyang Bay	Republic of Korea	KOR	Asia	34.8833	127.767 34.8833/127.767

Taxonmaps

69479

Global distribution of 16S sequence JN864027 (>99% sequence identity) for Algibacter agarilyticus subclade from Microbeatlas

Aquatic Samples	89
Soil Samples	8
Animal Samples	1
Plant Samples
Total Samples	98

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31072	Algibacter agarolyticus strain KYW563 16S ribosomal RNA gene, partial sequence	JN864027	1452		1109739

GC content

@ref	GC-content (mol%)
31072	38.3
67771	37.9-38.7

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algibacter agarivorans sp. nov. and Algibacter agarilyticus sp. nov., isolated from seawater, reclassification of Marinivirga aestuarii as Algibacter aestuarii comb. nov. and emended description of the genus Algibacter.	Park SC, Hwang YM, Lee JH, Baik KS, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.051300-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27401	IJSEM 3494 2013 ( DOI 10.1099/ijs.0.051300-0 , PubMed 23543504 )
#31072	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27401
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Algibacter agarilyticus (KCTC 23857, JCM 18275, KYW563)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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