Halopelagius longus (CGMCC 1.12397, JCM 18758, BC12-B1)

Name: Halopelagius longus (CGMCC 1.12397, JCM 18758, BC12-B1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134022

Type strain

Strain Designation BC12-B1

Culture col. no. CGMCC 1.12397 JCM 18758 BC12-B1

NCBI tax ID(s) 1236180

Special Collections JCM Literature strains

History W. Zhang BC12-B1.

Links

Halopelagius longus BC12-B1 is an aerobe, Gram-negative, motile archaeon that was isolated from salt mine.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 132754

JCM 18758

@ref 20215

Last LPSN update 2026-02-09 11:32:05

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Halopelagius

Species Halopelagius longus

Full scientific name Halopelagius longus Zhang et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
31074	negative	rod-shaped

Pigmentation

31074

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
31074	positive	growth	20-55
31074	positive	optimum	48
67770	positive	growth	37

Culture pH

@ref	Ability	Type	PH
31074	positive	optimum	7.15
31074	positive	growth	6.0-8.0

Physiology and metabolism

Oxygen tolerance

31074

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		97

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31074	NaCl	positive	growth	10.44-34.8 %
31074	NaCl	positive	optimum	18.85 %

Observation

31074

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31074	30089 ChEBI	acetate	+	carbon source
31074	22599 ChEBI	arabinose	+	carbon source
31074	17057 ChEBI	cellobiose	+	carbon source
31074	16947 ChEBI	citrate	+	carbon source
31074	28757 ChEBI	fructose	+	carbon source
31074	28260 ChEBI	galactose	+	carbon source
31074	17234 ChEBI	glucose	+	carbon source
31074	17754 ChEBI	glycerol	+	carbon source
31074	24996 ChEBI	lactate	+	carbon source
31074	17716 ChEBI	lactose	+	carbon source
31074	25115 ChEBI	malate	+	carbon source
31074	17306 ChEBI	maltose	+	carbon source
31074	29864 ChEBI	mannitol	+	carbon source
31074	37684 ChEBI	mannose	+	carbon source
31074	18257 ChEBI	ornithine	+	carbon source
31074	15361 ChEBI	pyruvate	+	carbon source
31074	33942 ChEBI	ribose	+	carbon source
31074	30911 ChEBI	sorbitol	+	carbon source
31074	30031 ChEBI	succinate	+	carbon source
31074	17992 ChEBI	sucrose	+	carbon source
31074	27082 ChEBI	trehalose	+	carbon source
31074	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
31074	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
31074	catalase	+	1.11.1.6
31074	cytochrome oxidase	+	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	gluconeogenesis	100	8 of 8
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	enterobactin biosynthesis	100	3 of 3
66794	factor 420 biosynthesis	100	5 of 5
66794	L-lactaldehyde degradation	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	denitrification	100	2 of 2
66794	aerobactin biosynthesis	100	1 of 1
66794	vitamin B1 metabolism	92.31	12 of 13
66794	Entner Doudoroff pathway	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	starch degradation	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	palmitate biosynthesis	86.36	19 of 22
66794	phenylalanine metabolism	84.62	11 of 13
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	valine metabolism	77.78	7 of 9
66794	pyrimidine metabolism	75.56	34 of 45
66794	isoleucine metabolism	75	6 of 8
66794	ketogluconate metabolism	75	6 of 8
66794	biotin biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	purine metabolism	74.47	70 of 94
66794	vitamin B12 metabolism	73.53	25 of 34
66794	NAD metabolism	72.22	13 of 18
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	tyrosine metabolism	71.43	10 of 14
66794	heme metabolism	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	lipid metabolism	70.97	22 of 31
66794	glycolysis	70.59	12 of 17
66794	propionate fermentation	70	7 of 10
66794	myo-inositol biosynthesis	70	7 of 10
66794	degradation of sugar acids	68	17 of 25
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	acetoin degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	pantothenate biosynthesis	66.67	4 of 6
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	d-mannose degradation	66.67	6 of 9
66794	non-pathway related	65.79	25 of 38
66794	methionine metabolism	65.38	17 of 26
66794	photosynthesis	64.29	9 of 14
66794	alanine metabolism	62.07	18 of 29
66794	histidine metabolism	62.07	18 of 29
66794	leucine metabolism	61.54	8 of 13
66794	tryptophan metabolism	60.53	23 of 38
66794	3-chlorocatechol degradation	60	3 of 5
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	gallate degradation	60	3 of 5
66794	oxidative phosphorylation	59.34	54 of 91
66794	arginine metabolism	58.33	14 of 24
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	glutathione metabolism	57.14	8 of 14
66794	degradation of sugar alcohols	56.25	9 of 16
66794	nitrate assimilation	55.56	5 of 9
66794	lysine metabolism	54.76	23 of 42
66794	pentose phosphate pathway	54.55	6 of 11
66794	vitamin B6 metabolism	54.55	6 of 11
66794	proline metabolism	54.55	6 of 11
66794	d-xylose degradation	54.55	6 of 11
66794	metabolism of disaccharids	54.55	6 of 11
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	CDP-diacylglycerol biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	resorcinol degradation	50	1 of 2
66794	cysteine metabolism	50	9 of 18
66794	glycine metabolism	50	5 of 10
66794	androgen and estrogen metabolism	50	8 of 16
66794	arachidonic acid metabolism	50	9 of 18
66794	vitamin E metabolism	50	2 of 4
66794	urea cycle	46.15	6 of 13
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	carotenoid biosynthesis	45.45	10 of 22
66794	degradation of hexoses	44.44	8 of 18
66794	polyamine pathway	43.48	10 of 23
66794	degradation of pentoses	42.86	12 of 28
66794	mevalonate metabolism	42.86	3 of 7
66794	aclacinomycin biosynthesis	42.86	3 of 7
66794	isoprenoid biosynthesis	42.31	11 of 26
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	methanogenesis from CO2	41.67	5 of 12
66794	ascorbate metabolism	40.91	9 of 22
66794	hydrogen production	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	phenol degradation	40	8 of 20
66794	creatinine degradation	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	cholesterol biosynthesis	36.36	4 of 11
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	methane metabolism	33.33	1 of 3
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	sulfoquinovose degradation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	chlorophyll metabolism	33.33	6 of 18
66794	sulfate reduction	30.77	4 of 13
66794	catecholamine biosynthesis	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	ppGpp biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	sulfopterin metabolism	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17
66794	lipid A biosynthesis	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Other	#Mine
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
31074	salt mine
67770	Salt mine in Baicheng county	Xinjiang	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JX518988 (>99% sequence identity) for Halopelagius from Microbeatlas

Aquatic Samples	36
Soil Samples	8
Animal Samples
Plant Samples
Total Samples	44

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2671180169 annotated assembly for Halopelagius longus CGMCC 1.12397	contig	GCA_900100875	1236180.3	2671180169	1236180	76.86
67770	ASM335106v1 assembly for Halopelagius longus BC12-B1	scaffold	GCA_003351065	1236180.7	8062524812	1236180	71.98

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31074	Halopelagius longus strain BC12-B1 16S ribosomal RNA gene, partial sequence	JX518988	1472		1236180

GC content

@ref	GC-content (mol%)	Method
31074	64
67770	64	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halopelagius longus BC12-B1
NCBI: GCA_003351065

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.00	no
125439	motility	BacteriaNetⓘ	yes	65.90	no
125439	gram_stain	BacteriaNetⓘ	negative	82.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	71.20	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halopelagius longus sp. nov., a member of the family Halobacteriaceae isolated from a salt mine, and emended description of the genus Halopelagius.	Zhang X, Zhang WY, Shen AH, Huo YY, Zhu XF, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.051375-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27403	IJSEM 3585 2013 ( DOI 10.1099/ijs.0.051375-0 , PubMed 23584287 )
#31074	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27403
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halopelagius longus (CGMCC 1.12397, JCM 18758, BC12-B1)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900100875

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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