Name: Siminovitchia thermophila SgZ-10
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133982

Type strain:

Species: Siminovitchia thermophila

Strain Designation: SgZ-10

Culture col. no.: CCTCC AB 2012110, KACC 16873, DSM 105453

Strain history: <- Korean Agricultural Culture Collection, Jeollabuk-do, Republic of Korea; KACC 16873

NCBI tax ID(s): 1245522 (species)

SI-ID 401990

DSM 105453

Special Collections

Section

Siminovitchia thermophila SgZ-10 is a facultative anaerobe, spore-forming, Gram-positive bacterium that was isolated from compost.

Gram-positive
motile
rod-shaped
spore-forming
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Siminovitchia*
	Species	**Siminovitchia thermophila**
	Full Scientific Name (LPSN)	Siminovitchia thermophila (Yang et al. 2013) Gupta et al. 2020

Synonym

Bacillus thermophilus

Information on morphological and physiological properties Morphology

[Ref.: #30991]	Gram stain	positive

[Ref.: #30991]	Cell length	2.95 µm

[Ref.: #30991]	Cell width	0.6 µm

[Ref.: #30991]	Cell shape	rod-shaped

[Ref.: #30991]	Motility	yes

[Ref.: #30991]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42663]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #42663]

Culture medium growth

[Ref.: #42663]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42663]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #30991]	growth	25-70 °C
[Ref.: #30991]	optimum	50 °C
[Ref.: #42663]	growth	50 °C

	pH	Kind of pH		pH
[Ref.: #30991]			optimum	7.25
[Ref.: #30991]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30991]

Oxygen tolerance

facultative anaerobe

[Ref.: #30991]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %90.014
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30991]		NaCl		growth	0-6	%
[Ref.: #30991]		NaCl		optimum	0.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30991]	3-hydroxybenzoate ChEBI	+	carbon source
[Ref.: #30991]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #30991]	4-hydroxybenzoate ChEBI	+	carbon source
[Ref.: #30991]	acetate ChEBI	+	carbon source
[Ref.: #30991]	alanine ChEBI	+	carbon source
[Ref.: #30991]	citrate ChEBI	+	carbon source
[Ref.: #30991]	esculin ChEBI	+	hydrolysis
[Ref.: #30991]	malonate ChEBI	+	carbon source
[Ref.: #30991]	maltose ChEBI	+	carbon source
[Ref.: #30991]	proline ChEBI	+	carbon source
[Ref.: #30991]	serine ChEBI	+	carbon source
[Ref.: #30991]	suberic acid ChEBI	+	carbon source
[Ref.: #30991]	valerate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30991]		catalase	+	1.11.1.6
[Ref.: #30991]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30991]	Sample type/isolated from	compost

[Ref.: #42663]	Sample type/isolated from	compost
[Ref.: #42663]	Geographic location (country and/or sea, region)	Dongguan
[Ref.: #42663]	Country	China
[Ref.: #42663]	Country ISO 3 Code	CHN
[Ref.: #42663]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Biodegradation

#Composting

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX274438 (>99% sequence identity) for Bacillus thermophilus subclade from Microbeatlas

Aquatic Samples	8
Soil Samples	35
Animal Samples	55
Plant Samples	3
Total Samples	101

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42663]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30991]	Bacillus thermophilus strain SgZ-10 16S ribosomal RNA gene, partial sequence	JX274438	1473	GenBank ENA	1245522 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Siminovitchia thermophila DSM 105453	GCA_016909185	contig	GenBank ENA	1245522 tax ID	*
[Ref.: #66792]	Bacillus thermophilus strain DSM 105453	1245522.3	wgs	PATRIC	1245522 tax ID	*
[Ref.: #66792]	Bacillus thermophilus DSM 105453	2901283257	draft	JGI IMG/M	1245522 tax ID	*

[Ref.: #30991]

GC-content

47.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bacillus thermophilus strain DSM 105453 PATRIC: 1245522.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacillus thermophilus strain DSM 105453 PATRIC: 1245522.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	66.954	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.865	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	90.014	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	63.723	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	66.157	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	79.686	no

Availability in culture collections External links

[Ref.: #42663]

Culture collection no.

CCTCC AB 2012110, KACC 16873, DSM 105453

[Ref.: #91655]

SI-ID 401990

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus composti sp. nov. and Bacillus thermophilus sp. nov., two thermophilic, Fe(III)-reducing bacteria isolated from compost.	Yang G, Chen M, Yu Z, Lu Q, Zhou S	Int J Syst Evol Microbiol	10.1099/ijs.0.049106-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30991

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27321 (see below)

#42663

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105453

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91655

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401990.1 )

#27321

IJSEM 3030 2013 ( DOI 10.1099/ijs.0.049106-0 , PubMed 23396719 )

* These data were automatically processed and therefore are not curated

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Bacillus thermophilus strain DSM 105453

Bacillus thermophilus strain DSM 105453

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