Name: Gillisia marina CBA3202
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133955

Type strain:

Species: Gillisia marina

Strain Designation: CBA3202

Culture col. no.: KACC 16693, KCTC 32030, JCM 18402

Strain history: <- SW Roh, KBSI <- M Lee

NCBI tax ID(s): 1167637 (species)

Section

Gillisia marina CBA3202 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Gillisia*
	Species	**Gillisia marina**
	Full Scientific Name (LPSN)	Gillisia marina Roh et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30944]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #30944]	Cell length	1.4 µm

[Ref.: #30944]	Cell width	0.5 µm

[Ref.: #30944]	Cell shape	rod-shaped

[Ref.: #30944]	Motility	no

[Ref.: #30944]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30944]	growth	04-30 °C
[Ref.: #30944]	optimum	25 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	15 °C

[Ref.: #30944]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30944]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #30944]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30944]		NaCl		growth	01-06	%
[Ref.: #30944]		NaCl		optimum	3	%

[Ref.: #30944]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30944]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #30944]	arabinose ChEBI	+	carbon source
[Ref.: #30944]	cellobiose ChEBI	+	carbon source
[Ref.: #30944]	fructose ChEBI	+	carbon source
[Ref.: #30944]	fucose ChEBI	+	carbon source
[Ref.: #30944]	galactose ChEBI	+	carbon source
[Ref.: #30944]	gluconate ChEBI	+	carbon source
[Ref.: #30944]	glucose ChEBI	+	carbon source
[Ref.: #30944]	glycerol ChEBI	+	carbon source
[Ref.: #30944]	glycogen ChEBI	+	carbon source
[Ref.: #30944]	maltose ChEBI	+	carbon source
[Ref.: #30944]	mannitol ChEBI	+	carbon source
[Ref.: #30944]	mannose ChEBI	+	carbon source
[Ref.: #30944]	melibiose ChEBI	+	carbon source
[Ref.: #30944]	raffinose ChEBI	+	carbon source
[Ref.: #30944]	rhamnose ChEBI	+	carbon source
[Ref.: #30944]	ribose ChEBI	+	carbon source
[Ref.: #30944]	sucrose ChEBI	+	carbon source
[Ref.: #30944]	trehalose ChEBI	+	carbon source
[Ref.: #30944]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30944]	acid phosphatase	+	3.1.3.2
[Ref.: #30944]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30944]	catalase	+	1.11.1.6
[Ref.: #30944]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30944]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30944]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Sand on a seashore in Seongsan
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From marine water, seaside
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ764565 (>99% sequence identity) for Gillisia marina from Microbeatlas

Aquatic Samples	174
Soil Samples	8
Animal Samples	7
Plant Samples
Total Samples	189

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30944]	Gillisia marina strain CBA3202 16S ribosomal RNA gene, partial sequence	JQ764565	1441	GenBank	1167637 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gillisia marina CBA3202	GCA_000258765	contig	GenBank	1167637 tax ID
[Ref.: #66792]	Gillisia marina CBA3202	2548877032	draft	JGI IMG/M	1167637 tax ID	*

[Ref.: #30944]

GC-content

34.9 mol%

Availability in culture collections External links

[Ref.: #30944]

Culture collection no.

KACC 16693, KCTC 32030, JCM 18402

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gillisia marina sp. nov., from seashore sand, and emended description of the genus Gillisia.	Roh SW, Lee M, Lee HW, Yim KJ, Heo SY, Kim KN, Yoon C, Nam YD, Kim JY, Hyun DW, Bae JW, Jeong JB, Kang H, Kim D	Int J Syst Evol Microbiol	10.1099/ijs.0.048116-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30944

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27274 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27274

IJSEM 3640 2013 ( DOI 10.1099/ijs.0.048116-0 , PubMed 23625255 )

* These data were automatically processed and therefore are not curated

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