Name: Glycocaulis abyssi LMG 27140
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133951

Type strain:

Species: Glycocaulis abyssi

Culture col. no.: LMG 27140, CCUG 62981, MCS 33

NCBI tax ID(s): 1433403 (species)

SI-ID 381071

LMG 27140, CCUG 62981

Section

Glycocaulis abyssi LMG 27140 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Maricaulaceae*
	Genus	*Glycocaulis*
	Species	**Glycocaulis abyssi**
	Full Scientific Name (LPSN)	Glycocaulis abyssi Abraham et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30933]	Gram stain	negative

[Ref.: #30933]	Cell length	0.9 µm

[Ref.: #30933]	Cell width	0.35 µm

[Ref.: #30933]	Cell shape	rod-shaped

[Ref.: #30933]	Motility	no

[Ref.: #62924]

Incubation period

2 days

[Ref.: #30933]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30933]	growth	15-35 °C
[Ref.: #30933]	optimum	30 °C
[Ref.: #62924]	growth	30 °C

[Ref.: #30933]	Temperature range	mesophilic
[Ref.: #62924]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30933]			optimum	7
[Ref.: #30933]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30933]	Oxygen tolerance	aerobe
[Ref.: #62924]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30933]		NaCl		growth	2.0-10.0	%
[Ref.: #30933]		NaCl		optimum	4	%

[Ref.: #30933]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30933]	adipate ChEBI	+	carbon source
[Ref.: #30933]	esculin ChEBI	+	hydrolysis
[Ref.: #30933]	malate ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30933]	acid phosphatase	+	3.1.3.2
[Ref.: #30933]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30933]	catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30933]	Sample type/isolated from	seawater

[Ref.: #62924]	Sample type/isolated from	Sea water,hydrothermal vent
[Ref.: #62924]	Geographic location (country and/or sea, region)	Vancouver Island
[Ref.: #62924]	Country	Canada
[Ref.: #62924]	Country ISO 3 Code	CAN
[Ref.: #62924]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ227811 (>99% sequence identity) for Glycocaulis from Microbeatlas

Aquatic Samples	958
Soil Samples	212
Animal Samples	402
Plant Samples	20
Total Samples	1592

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30933]	Glycocaulis abyssi DNA for 16S ribosomal RNA, type strain MCS 33T	AJ227811	1422	GenBank	1433403 tax ID

[Ref.: #30933]

GC-content

62.8 mol%

Availability in culture collections External links

[Ref.: #30933]

Culture collection no.

LMG 27140, CCUG 62981, MCS 33

[Ref.: #91644]

SI-ID 381071

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aquidulcibacter paucihalophilus gen. nov., sp. nov., a novel member of family Caulobacteraceae isolated from cyanobacterial aggregates in a eutrophic lake.	Cai H, Shi Y, Wang Y, Cui H, Jiang H	Antonie Van Leeuwenhoek	10.1007/s10482-017-0889-4	2017	*
Phylogeny	Cauliform bacteria lacking phospholipids from an abyssal hydrothermal vent: proposal of Glycocaulis abyssi gen. nov., sp. nov., belonging to the family Hyphomonadaceae.	Abraham WR, Lunsdorf H, Vancanneyt M, Smit J	Int J Syst Evol Microbiol	10.1099/ijs.0.047894-0	2012	*
Phylogeny	Glycocaulis alkaliphilus sp. nov., a dimorphic prosthecate bacterium isolated from crude oil.	Geng S, Pan XC, Mei R, Wang YN, Liu XY, Wang XB, Tang YQ, Wu XL	Int J Syst Evol Microbiol	10.1099/ijs.0.000023	2014	*
Phylogeny	Glycocaulis albus sp. nov., a moderately halophilic dimorphic prosthecate bacterium isolated from petroleum-contaminated saline soil.	Lv XL, Xie BS, Cai M, Geng S, Tang YQ, Wang YN, Cui HL, Liu XY, Ye SY, Wu XL	Int J Syst Evol Microbiol	10.1099/ijs.0.063537-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30933

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27263 (see below)

#62924 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62981

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91644

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID381071.1 )

#27263

IJSEM 2207 2013 ( DOI 10.1099/ijs.0.047894-0 , PubMed 23148094 )

* These data were automatically processed and therefore are not curated

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