Nocardioides marinquilinus (KCCM 90109, JCM 18459, CL-GY44)

Name: Nocardioides marinquilinus (KCCM 90109, JCM 18459, CL-GY44)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133952

Type strain

Strain Designation CL-GY44

Culture col. no. KCCM 90109 JCM 18459 CL-GY44

NCBI tax ID(s) 1210400

Special Collections JCM Literature strains

History JCM <-- B. C. Cho CL-GY44.

Links

Nocardioides marinquilinus CL-GY44 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from seawater.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 133701

JCM 18459

@ref 20215

Last LPSN update 2026-05-29 08:38:13

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Nocardioides

Species Nocardioides marinquilinus

Full scientific name Nocardioides marinquilinus Cho et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
30934	positive	1.8 µm	0.65 µm	rod-shaped
125439	positive					98.123

Pigmentation

30934

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30934	positive	growth	10-35
30934	positive	optimum	30
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
30934	positive	optimum	7
30934	positive	growth	6.0-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30934	aerobe
125439	obligate aerobe	99.748

Spore formation

30934

Spore formationno

Observation

@ref	Observation
30934	aggregates in clumps
67770	quinones: MK-8(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30934	17057 ChEBI	cellobiose	+	carbon source
30934	4853 ChEBI	esculin	+	hydrolysis
30934	28260 ChEBI	galactose	+	carbon source
30934	506227 ChEBI	N-acetylglucosamine	+	carbon source
30934	26271 ChEBI	proline	+	carbon source
30934	15361 ChEBI	pyruvate	+	carbon source
30934	16634 ChEBI	raffinose	+	carbon source
30934	17814 ChEBI	salicin	+	carbon source
30934	17992 ChEBI	sucrose	+	carbon source
30934	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30934	acid phosphatase	+	3.1.3.2
30934	alkaline phosphatase	+	3.1.3.1
30934	alpha-galactosidase	+	3.2.1.22
30934	catalase	+	1.11.1.6
30934	gelatinase	+
30934	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
30934	seawater
67770	Coastal seawater of Gwangyang Bay	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence JX164255 (>99% sequence identity) for Nocardioides marinquilinus subclade from Microbeatlas

Aquatic Samples	163
Soil Samples	432
Animal Samples	559
Plant Samples	199
Total Samples	1353

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3954370v1 assembly for Nocardioides marinquilinus JCM 18459	scaffold	GCA_039543705	1210400	70.73

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30934	Nocardioides marinquilinus strain CL-GY44 16S ribosomal RNA gene, partial sequence	JX164255	1429		1210400

GC content

@ref	GC-content (mol%)	Method
30934	71.6
67770	71.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3954370v1 assembly for Nocardioides marinquilinus JCM 18459
NCBI: GCA_039543705

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.75	no
125439	gram_stain	BacteriaNetⓘ	positive	98.12	no
125439	spore_formation	BacteriaNetⓘ	no	80.67	no
125439	motility	BacteriaNetⓘ	no	77.51	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides antarcticus sp. nov., isolated from marine sediment.	Deng S, Chang X, Zhang Y, Ren L, Jiang F, Qu Z, Peng F	Int J Syst Evol Microbiol	10.1099/ijs.0.000309	2015
Phylogeny	Nocardioides marinquilinus sp. nov., isolated from coastal seawater.	Cho Y, Jang GI, Cho BC	Int J Syst Evol Microbiol	10.1099/ijs.0.047902-0	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27264	IJSEM 2594 2013 ( DOI 10.1099/ijs.0.047902-0 , PubMed 23264497 )
#30934	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27264
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardioides marinquilinus (KCCM 90109, JCM 18459, CL-GY44)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039543705

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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