Name: Nocardioides marinquilinus CL-GY44
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133952

Type strain:

Species: Nocardioides marinquilinus

Strain Designation: CL-GY44

Culture col. no.: KCCM 90109, JCM 18459

Strain history: B. C. Cho CL-GY44.

NCBI tax ID(s): 1210400 (species)

Section

Nocardioides marinquilinus CL-GY44 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from seawater.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides marinquilinus**
	Full Scientific Name (LPSN)	Nocardioides marinquilinus Cho et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30934]	Gram stain	positive

[Ref.: #30934]	Cell length	1.8 µm

[Ref.: #30934]	Cell width	0.65 µm

[Ref.: #30934]	Cell shape	rod-shaped

[Ref.: #30934]	Motility	no

[Ref.: #30934]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30934]	growth	10-35 °C
[Ref.: #30934]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #30934]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30934]			optimum	7
[Ref.: #30934]			growth	6.0-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30934]

Oxygen tolerance

aerobe

[Ref.: #30934]

Ability of spore formation

[Ref.: #30934]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30934]	cellobiose ChEBI	+	carbon source
[Ref.: #30934]	esculin ChEBI	+	hydrolysis
[Ref.: #30934]	galactose ChEBI	+	carbon source
[Ref.: #30934]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30934]	proline ChEBI	+	carbon source
[Ref.: #30934]	pyruvate ChEBI	+	carbon source
[Ref.: #30934]	raffinose ChEBI	+	carbon source
[Ref.: #30934]	salicin ChEBI	+	carbon source
[Ref.: #30934]	sucrose ChEBI	+	carbon source
[Ref.: #30934]	trehalose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30934]	acid phosphatase	+	3.1.3.2
[Ref.: #30934]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30934]	alpha-galactosidase	+	3.2.1.22
[Ref.: #30934]	catalase	+	1.11.1.6
[Ref.: #30934]	gelatinase	+
[Ref.: #30934]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30934]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Coastal seawater of Gwangyang Bay
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX164255 (>99% sequence identity) for Nocardioides marinquilinus subclade from Microbeatlas

Aquatic Samples	163
Soil Samples	432
Animal Samples	559
Plant Samples	199
Total Samples	1353

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30934]	Nocardioides marinquilinus strain CL-GY44 16S ribosomal RNA gene, partial sequence	JX164255	1429	GenBank	1210400 tax ID

[Ref.: #30934]	GC-content	71.6 mol%
[Ref.: #67770]	GC-content	71.6 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #30934]

Culture collection no.

KCCM 90109, JCM 18459

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides antarcticus sp. nov., isolated from marine sediment.	Deng S, Chang X, Zhang Y, Ren L, Jiang F, Qu Z, Peng F	Int J Syst Evol Microbiol	10.1099/ijs.0.000309	2015	*
Phylogeny	Nocardioides marinquilinus sp. nov., isolated from coastal seawater.	Cho Y, Jang GI, Cho BC	Int J Syst Evol Microbiol	10.1099/ijs.0.047902-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30934

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27264 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27264

IJSEM 2594 2013 ( DOI 10.1099/ijs.0.047902-0 , PubMed 23264497 )

* These data were automatically processed and therefore are not curated

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