Name: Ilumatobacter nonamiensis YM16-303
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133933

Type strain:

Species: Ilumatobacter nonamiensis

Strain Designation: YM16-303

Culture col. no.: NBRC 29153, KCTC 29139

NCBI tax ID(s): 467093 (species)

Section

Ilumatobacter nonamiensis YM16-303 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from soil.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Acidimicrobiia*
	Order	*Acidimicrobiales*
	Family	*Ilumatobacteraceae*
	Genus	*Ilumatobacter*
	Species	**Ilumatobacter nonamiensis**
	Full Scientific Name (LPSN)	Ilumatobacter nonamiensis corrig. Matsumoto et al. 2013

Synonym

Ilumatobacter nonamiense

Information on morphological and physiological properties Morphology

[Ref.: #30911]	Gram stain	positive

[Ref.: #30911]	Cell length	0.85 µm

[Ref.: #30911]	Cell width	0.55 µm

[Ref.: #30911]	Cell shape	rod-shaped

[Ref.: #30911]	Motility	no

[Ref.: #30911]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30911]			growth	10-30 °C

	pH	Kind of pH		pH
[Ref.: #30911]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30911]

Oxygen tolerance

aerobe

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30911]		esculin ChEBI	+	hydrolysis

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30911]		acid phosphatase	+	3.1.3.2
[Ref.: #30911]		alkaline phosphatase	+	3.1.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30911]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB360345 (>99% sequence identity) for Ilumatobacter nonamiensis subclade from Microbeatlas

Aquatic Samples	2591
Soil Samples	277
Animal Samples	315
Plant Samples	16
Total Samples	3199

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30911]	Ilumatobacter nonamiensis YM16-303 gene for 16S rRNA, partial sequence	AB360345	1443	GenBank	1313171 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ilumatobacter nonamiensis YM16-303	GCA_000350145	contig	GenBank	1313171 tax ID	*
[Ref.: #66792]	Ilumatobacter nonamiensis YM16-303	2565956804	draft	JGI IMG/M	1313171 tax ID	*

Availability in culture collections External links

[Ref.: #30911]

Culture collection no.

NBRC 29153, KCTC 29139

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of Ilumatobacter coccineum YM16-304(T.).	Fujinami S, Takarada H, Kasai H, Sekine M, Omata S, Harada T, Fukai R, Hosoyama A, Horikawa H, Kato Y, Nakazawa H, Fujita N	Stand Genomic Sci	10.4056/sigs.4007734	2013	*
Phylogeny	Ilumatobacter nonamiense sp. nov. and Ilumatobacter coccineum sp. nov., isolated from seashore sand.	Matsumoto A, Kasai H, Matsuo Y, Shizuri Y, Ichikawa N, Fujita N, Omura S, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.047316-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30911

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27241 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27241

IJSEM 3404 2013 ( DOI 10.1099/ijs.0.047316-0 , PubMed 23524358 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Ilumatobacter nonamiensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF