Mycetocola zhadangensis (KACC 16570, CGMCC 1.12042, ZD1-4)

Name: Mycetocola zhadangensis (KACC 16570, CGMCC 1.12042, ZD1-4)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133932

Type strain

Strain Designation ZD1-4

Culture col. no. KACC 16570 CGMCC 1.12042 ZD1-4 JCM 18131

NCBI tax ID(s) 1164595

Special Collections JCM Literature strains

Links

Mycetocola zhadangensis ZD1-4 is an aerobe, Gram-positive, rod-shaped prokaryote that was isolated from snow.

Gram-positive rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 133444

JCM 18131

@ref 20215

Last LPSN update 2025-12-16 10:01:55

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Mycetocola

Species Mycetocola zhadangensis

Full scientific name Mycetocola zhadangensis Shen et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
30905	positive	rod-shaped
125438	positive		90.896

Pigmentation

30905

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
30905	positive	growth	0-40
30905	positive	optimum	25	mesophilic
67770	positive	growth	25	mesophilic

Culture pH

@ref	Ability	Type	PH
30905	positive	optimum	7
30905	positive	growth	05-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30905	aerobe
125439	obligate aerobe	98.9

Spore formation

@ref	Spore formation	Confidence
125439		93.5

Observation

@ref	Observation
30905	aggregates in clumps
67770	quinones: MK-10, MK-9, MK-11

Enzymes

@ref	Value	Activity	Ec
30905	acid phosphatase	+	3.1.3.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Ice

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
30905	snow
67770	Zhadang Glacier on the Qinghai-Tibetan Plateau	China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1463645v1 assembly for Mycetocola zhadangensis CGMCC 1.12042	contig	GCA_014636455	1164595.4	8065913489	1164595	74.94
67770	ASM366856v1 assembly for Mycetocola zhadangensis ZD1-4	contig	GCA_003668565	1164595.3	2866453822	1164595	74.4

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30905	Mycetocola zhadangensis strain ZD1-4 16S ribosomal RNA gene, partial sequence	JQ409017	1437		1164595

GC content

@ref	GC-content (mol%)	Method
30905	63.8
67770	63.6-64	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycetocola zhadangensis CGMCC 1.12042
NCBI: GCA_014636455

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.90	no
125439	gram_stain	BacteriaNetⓘ	positive	66.70	no
125439	motility	BacteriaNetⓘ	yes	50.00	no
125439	spore_formation	BacteriaNetⓘ	no	93.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycetocola zhadangensis strain CGMCC 1.12042
PATRIC: 1164595.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.90	yes
125438	anaerobic	anaerobicⓘ	no	99.13	yes
125438	spore-forming	spore-formingⓘ	no	76.41	no
125438	aerobic	aerobicⓘ	yes	87.75	yes
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Effects of simulated space environmental conditions on cleanroom microbes.	Cassilly CD, Chander AM, Vaughn JA, Kunstman KJ, Green SJ, Venkateswaran K, Bertone PF, Bahr CW, Marcella SA, Morris HC.	Front Microbiol	10.3389/fmicb.2025.1600106	2025
Phylogeny	Mycetocola zhujimingii sp. nov., isolated from faeces of Tibetan antelopes (Pantholops hodgsonii).	Li J, Yang J, Lu S, Jin D, Lai XH, Zhang G, Tian Z, Pu J, Wu X, Huang Y, Wang S, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003280	2019
Phylogeny	Mycetocola zhadangensis sp. nov., isolated from snow.	Shen L, Liu Y, Yao T, Kang S, Wang Y, Jiao N, Liu H, Zhou Y, Xu B, Liu X	Int J Syst Evol Microbiol	10.1099/ijs.0.047159-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27235	IJSEM 3375 2013 ( DOI 10.1099/ijs.0.047159-0 , PubMed 23524357 )
#30905	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27235
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycetocola zhadangensis (KACC 16570, CGMCC 1.12042, ZD1-4)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014636455

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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