Luteolibacter yonseiensis (KCTC 23678, JCM 18052, EBTL01)

Name: Luteolibacter yonseiensis (KCTC 23678, JCM 18052, EBTL01)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133924

Type strain

Strain Designation EBTL01

Culture col. no. KCTC 23678 JCM 18052 EBTL01

NCBI tax ID(s) 1144680

Special Collections JCM KCTC Literature strains

History J. Park EBTL01.

Links

Luteolibacter yonseiensis EBTL01 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from activated sludge.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 287476

KCTC 23678,JCM 18052

@ref 20215

Last LPSN update 2026-02-09 11:32:04

Domain Bacteria

Phylum Verrucomicrobiota

Class Verrucomicrobiia

Order Verrucomicrobiales

Family Verrucomicrobiaceae

Genus Luteolibacter

Species Luteolibacter yonseiensis

Full scientific name Luteolibacter yonseiensis Park et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
30883	negative	1.35 µm	0.65 µm	rod-shaped
125438	negative					91.44

Pigmentation

30883

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30883	positive	growth	10-30
30883	positive	optimum	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH
30883	positive	optimum	7
30883	positive	growth	5.5-8

Physiology and metabolism

Oxygen tolerance

30883

Oxygen toleranceaerobe

Spore formation

30883

Spore formationno

Observation

30883

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30883	16947 ChEBI	citrate	+	carbon source
30883	17234 ChEBI	glucose	+	carbon source
30883	25115 ChEBI	malate	+	carbon source
30883	17306 ChEBI	maltose	+	carbon source
30883	37684 ChEBI	mannose	+	carbon source
30883	506227 ChEBI	N-acetylglucosamine	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30883	catalase	+	1.11.1.6
30883	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Activated sludge

Isolation

@ref	Sample type
30883	activated sludge
67770	Activated sludge by using media containing algal metabolites

Taxonmaps

69479

Global distribution of 16S sequence JQ319003 (>99% sequence identity) for Luteolibacter from Microbeatlas

Aquatic Samples	367
Soil Samples	146
Animal Samples	48
Plant Samples	54
Total Samples	615

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1659546v1 assembly for Luteolibacter yonseiensis JCM 18052	scaffold	GCA_016595465	1144680.3	2994574505	1144680	73.62
124043	ASM3954236v1 assembly for Luteolibacter yonseiensis JCM 18052	scaffold	GCA_039542365			1144680	70.43

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30883	Luteolibacter yonseiensis strain EBTL01 16S ribosomal RNA gene, partial sequence	JQ319003	1407		1144680

GC content

30883

GC-content (mol%)56.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Luteolibacter yonseiensis JCM 18052
NCBI: GCA_016595465

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	75.90	no
125439	motility	BacteriaNetⓘ	no	73.20	no
125439	gram_stain	BacteriaNetⓘ	positive	68.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	82.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Luteolibacter yonseiensis JCM 18052
NCBI: GCA_016595465.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	91.44	no
125438	anaerobic	anaerobicⓘ	no	92.33	no
125438	aerobic	aerobicⓘ	yes	78.02	yes
125438	spore-forming	spore-formingⓘ	no	85.98	yes
125438	thermophilic	thermophileⓘ	no	92.97	yes
125438	flagellated	motile2+ⓘ	no	74.54	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Luteolibacter arcticus sp. nov., isolated from high Arctic tundra soil, and emended description of the genus Luteolibacter.	Kim M, Pak S, Rim S, Ren L, Jiang F, Chang X, Liu P, Zhang Y, Fang C, Zheng C, Peng F	Int J Syst Evol Microbiol	10.1099/ijs.0.000202	2015
Phylogeny	Luteolibacter yonseiensis sp. nov., isolated from activated sludge using algal metabolites.	Park J, Baek GS, Woo SG, Lee J, Yang J, Lee J	Int J Syst Evol Microbiol	10.1099/ijs.0.046664-0	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27213	IJSEM 1891 2013 ( DOI 10.1099/ijs.0.046664-0 , PubMed 23002048 )
#30883	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27213
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Luteolibacter yonseiensis (KCTC 23678, JCM 18052, EBTL01)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_016595465

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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