Name: Luteolibacter yonseiensis EBTL01
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133924

Type strain:

Species: Luteolibacter yonseiensis

Strain Designation: EBTL01

Culture col. no.: KCTC 23678, JCM 18052

Strain history: J. Park EBTL01.

NCBI tax ID(s): 1144680 (species)

Section

Luteolibacter yonseiensis EBTL01 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from activated sludge.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Verrucomicrobiota*
	Class	*Verrucomicrobiia*
	Order	*Verrucomicrobiales*
	Family	*Verrucomicrobiaceae*
	Genus	*Luteolibacter*
	Species	**Luteolibacter yonseiensis**
	Full Scientific Name (LPSN)	Luteolibacter yonseiensis Park et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30883]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.814

[Ref.: #30883]	Cell length	1.35 µm

[Ref.: #30883]	Cell width	0.65 µm

[Ref.: #30883]	Cell shape	rod-shaped

[Ref.: #30883]	Motility	no

[Ref.: #30883]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30883]	growth	10-30 °C
[Ref.: #30883]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #30883]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30883]			optimum	7
[Ref.: #30883]			growth	5.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30883]

Oxygen tolerance

aerobe

[Ref.: #30883]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.972

[Ref.: #30883]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30883]	citrate ChEBI	+	carbon source
[Ref.: #30883]	glucose ChEBI	+	carbon source
[Ref.: #30883]	malate ChEBI	+	carbon source
[Ref.: #30883]	maltose ChEBI	+	carbon source
[Ref.: #30883]	mannose ChEBI	+	carbon source
[Ref.: #30883]	N-acetylglucosamine ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30883]		catalase	+	1.11.1.6
[Ref.: #30883]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30883]	Sample type/isolated from	activated sludge

[Ref.: #67770]	Sample type/isolated from	Activated sludge by using media containing algal metabolites
* marker position based on {}

Isolation sources categories

#Engineered

#Waste

#Activated sludge

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ319003 (>99% sequence identity) for Luteolibacter from Microbeatlas

Aquatic Samples	367
Soil Samples	146
Animal Samples	48
Plant Samples	54
Total Samples	615

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30883]	Luteolibacter yonseiensis strain EBTL01 16S ribosomal RNA gene, partial sequence	JQ319003	1407	GenBank	1144680 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Luteolibacter yonseiensis JCM 18052	GCA_016595465	scaffold	GenBank	1144680 tax ID	*
[Ref.: #66792]	Luteolibacter yonseiensis strain JCM 18052	1144680.3	wgs	PATRIC	1144680 tax ID	*

[Ref.: #30883]

GC-content

56.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Luteolibacter yonseiensis JCM 18052 NCBI: GCA_016595465.1
[Ref.: #69481]	spore-forming	no	76	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Luteolibacter yonseiensis JCM 18052 NCBI: GCA_016595465.1
[Ref.: #69480]	flagellated	no	94.153	yes
[Ref.: #69480]	gram-positive	no	97.183	yes
[Ref.: #69480]	anaerobic	no	99.036	yes
[Ref.: #69480]	aerobic	yes	88.128	no
[Ref.: #69480]	halophile	no	91.387	no
[Ref.: #69480]	spore-forming	no	94.957	no
[Ref.: #69480]	thermophile	no	99.666	no
[Ref.: #69480]	glucose-util	yes	89.636	yes
[Ref.: #69480]	motile	no	87.842	yes
[Ref.: #69480]	glucose-ferment	no	83.463	no

Availability in culture collections External links

[Ref.: #30883]

Culture collection no.

KCTC 23678, JCM 18052

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Luteolibacter arcticus sp. nov., isolated from high Arctic tundra soil, and emended description of the genus Luteolibacter.	Kim M, Pak S, Rim S, Ren L, Jiang F, Chang X, Liu P, Zhang Y, Fang C, Zheng C, Peng F	Int J Syst Evol Microbiol	10.1099/ijs.0.000202	2015	*
Phylogeny	Luteolibacter yonseiensis sp. nov., isolated from activated sludge using algal metabolites.	Park J, Baek GS, Woo SG, Lee J, Yang J, Lee J	Int J Syst Evol Microbiol	10.1099/ijs.0.046664-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30883

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27213 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#27213

IJSEM 1891 2013 ( DOI 10.1099/ijs.0.046664-0 , PubMed 23002048 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Luteolibacter yonseiensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Luteolibacter yonseiensis JCM 18052

Luteolibacter yonseiensis JCM 18052

Change proposal

Change proposal