Name: Marinicauda pacifica P-1 km-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133923

Type strain:

Species: Marinicauda pacifica

Strain Designation: P-1 km-3

Culture col. no.: KACC 16526, CGMCC 1.11031

NCBI tax ID(s): 1133559 (species)

Section

Marinicauda pacifica P-1 km-3 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Maricaulaceae*
	Genus	*Marinicauda*
	Species	**Marinicauda pacifica**
	Full Scientific Name (LPSN)	Marinicauda pacifica Zhang et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30882]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #30882]	Cell length	2 µm

[Ref.: #30882]	Cell width	0.4 µm

[Ref.: #30882]	Cell shape	rod-shaped

[Ref.: #30882]	Motility	no

[Ref.: #30882]

Pigment production

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30882]			growth	06-40 °C
[Ref.: #30882]			optimum	30 °C

[Ref.: #30882]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30882]			optimum	7
[Ref.: #30882]			growth	6.0-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30882]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30882]		NaCl		growth	0.5-12	%
[Ref.: #30882]		NaCl		optimum	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30882]	adipate ChEBI	+	carbon source
[Ref.: #30882]	arabinose ChEBI	+	carbon source
[Ref.: #30882]	citrate ChEBI	+	carbon source
[Ref.: #30882]	decanoate ChEBI	+	carbon source
[Ref.: #30882]	esculin ChEBI	+	hydrolysis
[Ref.: #30882]	gluconate ChEBI	+	carbon source
[Ref.: #30882]	glucose ChEBI	+	carbon source
[Ref.: #30882]	malate ChEBI	+	carbon source
[Ref.: #30882]	maltose ChEBI	+	carbon source
[Ref.: #30882]	mannitol ChEBI	+	carbon source
[Ref.: #30882]	mannose ChEBI	+	carbon source
[Ref.: #30882]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30882]	nitrate ChEBI	+	reduction
[Ref.: #30882]	phenylacetate ChEBI	+	carbon source
[Ref.: #30882]	urea ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30882]	acid phosphatase	+	3.1.3.2
[Ref.: #30882]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30882]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30882]	Sample type/isolated from	seawater
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30882]	Marinicauda pacifica strain P-1 km-3 16S ribosomal RNA gene, partial sequence	JQ045549	1428	GenBank	1133559 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinicauda pacifica CGMCC 1.11031	GCA_014636415	contig	GenBank	1133559 tax ID	*
[Ref.: #66792]	Marinicauda pacifica P-1 km-3	GCA_004793635	contig	GenBank	1133559 tax ID	*
[Ref.: #66792]	Marinicauda pacifica P-1 km-3	GCA_009806145	contig	GenBank	1133559 tax ID	*
[Ref.: #66792]	Marinicauda pacifica strain CGMCC 1.11031	1133559.7	wgs	PATRIC	1133559 tax ID	*
[Ref.: #66792]	Marinicauda pacifica P-1 km-3	2889699639	draft	JGI IMG/M	1133559 tax ID	*

[Ref.: #30882]

GC-content

66 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Marinicauda pacifica strain CGMCC 1.11031 PATRIC: 1133559.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marinicauda pacifica strain CGMCC 1.11031 PATRIC: 1133559.7
[Ref.: #69480]	motile	yes	92.765	yes
[Ref.: #69480]	flagellated	yes	50.868	yes
[Ref.: #69480]	gram-positive	no	98.914	yes
[Ref.: #69480]	anaerobic	no	98.115	yes
[Ref.: #69480]	aerobic	yes	90.836	no
[Ref.: #69480]	halophile	no	52.055	no
[Ref.: #69480]	spore-forming	no	95.807	no
[Ref.: #69480]	glucose-util	yes	67.119	no
[Ref.: #69480]	thermophile	no	96.776	yes
[Ref.: #69480]	glucose-ferment	no	93.995	no

Availability in culture collections External links

[Ref.: #30882]

Culture collection no.

KACC 16526, CGMCC 1.11031

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinicauda algicola sp. nov., isolated from a marine red alga Rhodosorus marinus.	Jeong SE, Jeon SH, Chun BH, Kim DW, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002129	2017	*
Phylogeny	Marinicauda pacifica gen. nov., sp. nov., a prosthecate alphaproteobacterium of the family Hyphomonadaceae isolated from deep seawater.	Zhang XY, Li GW, Wang CS, Zhang YJ, Xu XW, Li H, Liu A, Liu C, Xie BB, Qin QL, Xu Z, Chen XL, Zhou BC, Zhang YZ	Int J Syst Evol Microbiol	10.1099/ijs.0.046656-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30882

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27212 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#27212

IJSEM 2248 2013 ( DOI 10.1099/ijs.0.046656-0 , PubMed 23159747 )

* These data were automatically processed and therefore are not curated

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Marinicauda pacifica strain CGMCC 1.11031

Marinicauda pacifica strain CGMCC 1.11031

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