Name: Brumimicrobium mesophilum YH207
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133865

Type strain:

Species: Brumimicrobium mesophilum

Strain Designation: YH207

Culture col. no.: KCCM 42331, JCM 14063

Strain history: K. K. Kwon YH207.

NCBI tax ID(s): 392717 (species)

Section

Brumimicrobium mesophilum YH207 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Crocinitomicaceae*
	Genus	*Brumimicrobium*
	Species	**Brumimicrobium mesophilum**
	Full Scientific Name (LPSN)	Brumimicrobium mesophilum Yang et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30707]	Gram stain	negative

[Ref.: #30707]	Cell length	1.25 µm

[Ref.: #30707]	Cell width	0.4 µm

[Ref.: #30707]	Cell shape	rod-shaped

[Ref.: #30707]	Motility	no

[Ref.: #30707]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30707]	growth	11-36 °C
[Ref.: #30707]	optimum	26 °C
[Ref.: #67770]	growth	26 °C

[Ref.: #30707]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30707]			optimum	7.5
[Ref.: #30707]			growth	6.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30707]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30707]		NaCl		optimum	3.5	%

[Ref.: #30707]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30707]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #30707]	alanine ChEBI	+	carbon source
[Ref.: #30707]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #30707]	asparagine ChEBI	+	carbon source
[Ref.: #30707]	aspartate ChEBI	+	carbon source
[Ref.: #30707]	citrate ChEBI	+	carbon source
[Ref.: #30707]	fructose ChEBI	+	carbon source
[Ref.: #30707]	fucose ChEBI	+	carbon source
[Ref.: #30707]	galactose ChEBI	+	carbon source
[Ref.: #30707]	galacturonate ChEBI	+	carbon source
[Ref.: #30707]	gluconate ChEBI	+	carbon source
[Ref.: #30707]	glucosamine ChEBI	+	carbon source
[Ref.: #30707]	glucose ChEBI	+	carbon source
[Ref.: #30707]	glucuronamide ChEBI	+	carbon source
[Ref.: #30707]	glutamate ChEBI	+	carbon source
[Ref.: #30707]	lactose ChEBI	+	carbon source
[Ref.: #30707]	maltose ChEBI	+	carbon source
[Ref.: #30707]	mannitol ChEBI	+	carbon source
[Ref.: #30707]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #30707]	myo-inositol ChEBI	+	carbon source
[Ref.: #30707]	proline ChEBI	+	carbon source
[Ref.: #30707]	quinate ChEBI	+	carbon source
[Ref.: #30707]	raffinose ChEBI	+	carbon source
[Ref.: #30707]	rhamnose ChEBI	+	carbon source
[Ref.: #30707]	sorbitol ChEBI	+	carbon source
[Ref.: #30707]	sucrose ChEBI	+	carbon source
[Ref.: #30707]	threonine ChEBI	+	carbon source
[Ref.: #30707]	trehalose ChEBI	+	carbon source
[Ref.: #30707]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30707]	acid phosphatase	+	3.1.3.2
[Ref.: #30707]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30707]	alpha-galactosidase	+	3.2.1.22
[Ref.: #30707]	catalase	+	1.11.1.6
[Ref.: #30707]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30707]	Sample type/isolated from	marine sediment

[Ref.: #67770]	Sample type/isolated from	Tidal flat sediment at Yeongheung-do on the coast of the Yellow Sea, (37° 16' N 126° 26' E)
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
[Ref.: #67770]	Geographic location	37.2667°/126.4330°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30707]	Brumimicrobium mesophilum strain YH207 16S ribosomal RNA gene, partial sequence	DQ660382	1484	GenBank	392717 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Brumimicrobium mesophilum JCM 14063	GCA_003025005	contig	GenBank	392717 tax ID	*
[Ref.: #66792]	Brumimicrobium mesophilum strain JCM 14063	392717.5	wgs	PATRIC	392717 tax ID	*
[Ref.: #66792]	Brumimicrobium mesophilum JCM 14063	2831912403	draft	JGI IMG/M	392717 tax ID	*

[Ref.: #30707]	GC-content	34.3 mol%
[Ref.: #67770]	GC-content	34.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Brumimicrobium mesophilum strain JCM 14063 PATRIC: 392717.5
[Ref.: #69480]	gram-positive	no	97.444	yes
[Ref.: #69480]	anaerobic	no	98.88	yes
[Ref.: #69480]	halophile	yes	64.769	no
[Ref.: #69480]	spore-forming	no	94.47	no
[Ref.: #69480]	glucose-util	yes	83.738	yes
[Ref.: #69480]	aerobic	yes	91.478	yes
[Ref.: #69480]	motile	no	90.436	yes
[Ref.: #69480]	flagellated	no	96.342	yes
[Ref.: #69480]	thermophile	no	99.849	yes
[Ref.: #69480]	glucose-ferment	no	91.472	no

Availability in culture collections External links

[Ref.: #30707]

Culture collection no.

KCCM 42331, JCM 14063

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Luteibaculum oceani gen. nov., sp. nov., a carotenoid-producing, lipolytic bacterium isolated from surface seawater, and emended description of the genus Owenweeksia Lau et al. 2005.	Shahina M, Hameed A, Lin SY, Lai WA, Liu YC, Hsu YH, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.054635-0	2013	*
Phylogeny	Brumimicrobium salinarum sp. nov., isolated from a marine solar saltern.	Luo HR, Chen ZY, Fei JJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003003	2018	*
Phylogeny	Brumimicrobium mesophilum sp. nov., isolated from a tidal flat sediment, and emended descriptions of the genus Brumimicrobium and Brumimicrobium glaciale.	Yang SH, Seo HS, Oh HM, Kim SJ, Lee JH, Kwon KK	Int J Syst Evol Microbiol	10.1099/ijs.0.042614-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30707

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27038 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#27038

IJSEM 1105 2013 ( DOI 10.1099/ijs.0.042614-0 , PubMed 22707538 )

* These data were automatically processed and therefore are not curated

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Brumimicrobium mesophilum strain JCM 14063

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