Brumimicrobium mesophilum (KCCM 42331, JCM 14063, YH207)

Name: Brumimicrobium mesophilum (KCCM 42331, JCM 14063, YH207)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133865

Type strain

Strain Designation YH207

Culture col. no. KCCM 42331 JCM 14063 YH207

NCBI tax ID(s) 392717

Special Collections JCM Literature strains

History JCM <-- K. K. Kwon YH207.

Links

Brumimicrobium mesophilum YH207 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 133548

JCM 14063

@ref 20215

Last LPSN update 2026-05-29 08:38:11

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Crocinitomicaceae

Genus Brumimicrobium

Species Brumimicrobium mesophilum

Full scientific name Brumimicrobium mesophilum Yang et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30707	negative	1.25 µm	0.4 µm	rod-shaped
125438					92.5
125438	negative				96.085
125439	negative				98.751

Pigmentation

30707

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30707	positive	growth	11-36
30707	positive	optimum	26
67770	positive	growth	26

Culture pH

@ref	Ability	Type	PH	PH range
30707	positive	optimum	7.5
30707	positive	growth	6.5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30707	aerobe
125439	obligate aerobe	94.715

Spore formation

@ref	Spore formation	Confidence
125439		99.536

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30707	NaCl	positive	optimum	3.5 %

Observation

@ref	Observation
30707	aggregates in clumps
67770	quinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30707	28644 ChEBI	2-oxopentanoate	+	carbon source
30707	16449 ChEBI	alanine	+	carbon source
30707	40585 ChEBI	alpha-cyclodextrin	+	carbon source
30707	22653 ChEBI	asparagine	+	carbon source
30707	35391 ChEBI	aspartate	+	carbon source
30707	16947 ChEBI	citrate	+	carbon source
30707	28757 ChEBI	fructose	+	carbon source
30707	33984 ChEBI	fucose	+	carbon source
30707	28260 ChEBI	galactose	+	carbon source
30707	24175 ChEBI	galacturonate	+	carbon source
30707	24265 ChEBI	gluconate	+	carbon source
30707	5417 ChEBI	glucosamine	+	carbon source
30707	17234 ChEBI	glucose	+	carbon source
30707	32323 ChEBI	glucuronamide	+	carbon source
30707	29987 ChEBI	glutamate	+	carbon source
30707	17716 ChEBI	lactose	+	carbon source
30707	17306 ChEBI	maltose	+	carbon source
30707	29864 ChEBI	mannitol	+	carbon source
30707	37657 ChEBI	methyl D-glucoside	+	carbon source
30707	17268 ChEBI	myo-inositol	+	carbon source
30707	26271 ChEBI	proline	+	carbon source
30707	26490 ChEBI	quinate	+	carbon source
30707	16634 ChEBI	raffinose	+	carbon source
30707	26546 ChEBI	rhamnose	+	carbon source
30707	30911 ChEBI	sorbitol	+	carbon source
30707	17992 ChEBI	sucrose	+	carbon source
30707	26986 ChEBI	threonine	+	carbon source
30707	27082 ChEBI	trehalose	+	carbon source
30707	17151 ChEBI	xylitol	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30707	acid phosphatase	+	3.1.3.2
30707	alkaline phosphatase	+	3.1.3.1
30707	alpha-galactosidase	+	3.2.1.22
30707	catalase	+	1.11.1.6
30707	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Latitude	Longitude
30707	marine sediment
67770	Tidal flat sediment at Yeongheung-do on the coast of the Yellow Sea, (37° 16' N 126° 26' E)	Republic of Korea	KOR	Asia	37.2667	126.433 37.2667/126.433

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM302500v1 assembly for Brumimicrobium mesophilum JCM 14063	contig	GCA_003025005	392717.5	2831912403	392717	61.06

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30707	Brumimicrobium mesophilum strain YH207 16S ribosomal RNA gene, partial sequence	DQ660382	1484		392717

GC content

@ref	GC-content (mol%)	Method
30707	34.3
67770	34.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM302500v1 assembly for Brumimicrobium mesophilum JCM 14063
BV-BRC: 392717.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	98.75	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.72	no
125439	motility	BacteriaNetⓘ	no	81.85	no
125439	spore_formation	BacteriaNetⓘ	no	99.54	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Brumimicrobium mesophilum strain JCM 14063
PATRIC: 392717.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.09	no
125438	anaerobic	anaerobicⓘ	no	96.54	yes
125438	spore-forming	spore-formingⓘ	no	88.99	no
125438	aerobic	aerobicⓘ	yes	87.44	yes
125438	thermophilic	thermophileⓘ	no	96.96	yes
125438	flagellated	motile2+ⓘ	no	92.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Luteibaculum oceani gen. nov., sp. nov., a carotenoid-producing, lipolytic bacterium isolated from surface seawater, and emended description of the genus Owenweeksia Lau et al. 2005.	Shahina M, Hameed A, Lin SY, Lai WA, Liu YC, Hsu YH, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.054635-0	2013
Phylogeny	Brumimicrobium salinarum sp. nov., isolated from a marine solar saltern.	Luo HR, Chen ZY, Fei JJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003003	2018
Phylogeny	Brumimicrobium mesophilum sp. nov., isolated from a tidal flat sediment, and emended descriptions of the genus Brumimicrobium and Brumimicrobium glaciale.	Yang SH, Seo HS, Oh HM, Kim SJ, Lee JH, Kwon KK	Int J Syst Evol Microbiol	10.1099/ijs.0.042614-0	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27038	IJSEM 1105 2013 ( DOI 10.1099/ijs.0.042614-0 , PubMed 22707538 )
#30707	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27038
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Brumimicrobium mesophilum (KCCM 42331, JCM 14063, YH207)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003025005

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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