Name: Flavivirga amylovorans JC2681
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133734

Type strain:

Species: Flavivirga amylovorans

Strain Designation: JC2681

Culture col. no.: KACC 14157, JCM 17112

Strain history: J. Chun JC2681.

NCBI tax ID(s): 870486 (species)

Section

Flavivirga amylovorans JC2681 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavivirga*
	Species	**Flavivirga amylovorans**
	Full Scientific Name (LPSN)	Flavivirga amylovorans Yi et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30330]	Gram stain	negative

[Ref.: #30330]	Cell length	4.5 µm

[Ref.: #30330]	Cell width	0.35 µm

[Ref.: #30330]	Cell shape	rod-shaped

[Ref.: #30330]	Motility	yes

[Ref.: #30330]	Flagellum arrangement	gliding

[Ref.: #30330]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30330]	growth	4-30 °C
[Ref.: #30330]	optimum	25 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #30330]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30330]

Oxygen tolerance

aerobe

[Ref.: #30330]

Ability of spore formation

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30330]		esculin ChEBI	+	hydrolysis
[Ref.: #30330]		nitrate ChEBI	+	reduction

	Enzyme	Enzyme activity	EC number
[Ref.: #30330]	acid phosphatase	+	3.1.3.2
[Ref.: #30330]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30330]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30330]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30330]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Seawater of Jeju Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM475138 (>99% sequence identity) for Flavivirga amylovorans subclade from Microbeatlas

Aquatic Samples	5
Soil Samples
Animal Samples
Plant Samples
Total Samples	5

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30330]	Flavivirga amylovorans strain JC2681 from South Korea 16S ribosomal RNA gene, partial sequence	HM475138	1440	GenBank	870486 tax ID

[Ref.: #30330]	GC-content	33 mol%
[Ref.: #67770]	GC-content	33 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #30330]

Culture collection no.

KACC 14157, JCM 17112

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Palleronia sediminis sp. nov. and Flavivirga algicola sp. nov., two marine bacteria isolated from offshore areas near Weihai.	Sun XK, Zhang YN, Jia YY, Zhong YL, Chen GJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004949	2021	*
Phylogeny	Flavivirga rizhaonensis sp. nov., a marine bacterium isolated from intertidal sand.	Liu A, Liu HM, Du F, Wang S, Zhao LY, Zhang HH, Li YQ, Xue QJ, Li XZ	Antonie Van Leeuwenhoek	10.1007/s10482-019-01291-7	2019	*
Phylogeny	Flavivirga eckloniae sp. nov. and Flavivirga aquimarina sp. nov., isolated from seaweed Ecklonia cava.	Lee JH, Kang JW, Choe HN, Seong CN	Int J Syst Evol Microbiol	10.1099/ijsem.0.002094	2017	*
Phylogeny	Flavivirga jejuensis gen. nov., sp. nov., and Flavivirga amylovorans sp. nov., new members of the family Flavobacteriaceae isolated from seawater, and emended descriptions of the genera Psychroserpens and Lacinutrix.	Yi H, Cho JC, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.033605-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30330

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26671 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26671

IJSEM 1061 2012 ( DOI 10.1099/ijs.0.033605-0 , PubMed 21705445 )

* These data were automatically processed and therefore are not curated

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