Name: Colwellia piezophila Y223G
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133697

Type strain:

Species: Colwellia piezophila

Strain Designation: Y223G

Culture col. no.: JCM 11831, ATCC BAA-637

Strain history: Y. Nogi Y233G.

NCBI tax ID(s): 1265503 (strain), 211668 (species)

SI-ID 134283

ATCC BAA-637, JCM 11831

Special Collections

Section

Colwellia piezophila Y223G is a facultative anaerobe, psychrophilic, Gram-negative bacterium that was isolated from marine sediment.

Gram-negative
motile
rod-shaped
facultative anaerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Colwelliaceae*
	Genus	*Colwellia*
	Species	**Colwellia piezophila**
	Full Scientific Name (LPSN)	Colwellia piezophila Nogi et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #30190]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.5

[Ref.: #30190]	Cell length	2.0-4.0 µm

[Ref.: #30190]	Cell width	0.8-1 µm

[Ref.: #30190]	Cell shape	rod-shaped

[Ref.: #30190]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30190]			optimum	10 °C
[Ref.: #67770]			growth	10 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30190]

Oxygen tolerance

facultative anaerobe

[Ref.: #30190]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %91.336

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30190]		NaCl		optimum	3	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30190]		nitrate ChEBI	+	reduction

	Enzyme	Enzyme activity	EC number
[Ref.: #30190]	catalase	+	1.11.1.6
[Ref.: #30190]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30190]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30190]	Sample type/isolated from	marine sediment

[Ref.: #67770]	Sample type/isolated from	Sediment collected from the bottom of a small canyon on the Japan Trench
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30190]	Colwellia piezophila gene for 16S rRNA, partial sequence, strain:Y223G	AB094412	1474	GenBank ENA	211668 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Colwellia piezophila ATCC BAA-637	GCA_000378625	scaffold	GenBank ENA	1265503 tax ID

[Ref.: #30190]	GC-content	39 mol%
[Ref.: #67770]	GC-content	39.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Colwellia piezophila ATCC BAA-637 ATCC BAA-637 NCBI: GCA_000378625.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.5	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.128	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	73.426	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.336	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.481	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	86.601	no

Availability in culture collections External links

[Ref.: #30190]

Culture collection no.

JCM 11831, ATCC BAA-637

[Ref.: #91563]

SI-ID 134283

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Colwellia piezophila sp. nov., a novel piezophilic species from deep-sea sediments of the Japan Trench.	Nogi Y, Hosoya S, Kato C, Horikoshi K	Int J Syst Evol Microbiol	10.1099/ijs.0.03049-0	2004	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30190

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26536 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91563

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134283.1 )

#26536

IJSEM 1627 2004 ( DOI 10.1099/ijs.0.03049-0 , PubMed 15388720 )

* These data were automatically processed and therefore are not curated

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Colwellia piezophila ATCC BAA-637 ATCC BAA-637

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