Colwellia piezophila (JCM 11831, ATCC BAA-637, Y223G)

Name: Colwellia piezophila (JCM 11831, ATCC BAA-637, Y223G)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133697

Type strain

Strain Designation Y223G

Culture col. no. JCM 11831 ATCC BAA-637 Y223G

NCBI tax ID(s) 1265503 211668

Special Collections JCM Literature strains

Links

Colwellia piezophila Y223G is a facultative anaerobe, psychrophilic, Gram-negative prokaryote that was isolated from marine sediment.

Gram-negative motile rod-shaped facultative anaerobe psychrophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 134283

ATCC BAA-637,JCM 11831

@ref 20215

Last LPSN update 2025-12-16 10:01:51

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Colwelliaceae

Genus Colwellia

Species Colwellia piezophila

Full scientific name Colwellia piezophila Nogi et al. 2004

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
30190	negative	2.0-4.0 µm	0.8-1 µm	rod-shaped
125438	negative
125439	negative

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
30190	positive	optimum	10	psychrophilic
67770	positive	growth	10	psychrophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
30190	facultative anaerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation
30190
125438
125439

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30190	NaCl	positive	optimum	3 %

Observation

67770

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30190	17632 ChEBI	nitrate	+	reduction

Enzymes

@ref	Value	Activity	Ec
30190	catalase	+	1.11.1.6
30190	cytochrome oxidase	+	1.9.3.1
30190	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type
30190	marine sediment
67770	Sediment collected from the bottom of a small canyon on the Japan Trench

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM37862v1 assembly for Colwellia piezophila ATCC BAA-637	scaffold	GCA_000378625	1265503.3	2521172662	1265503	69.02

Genome browser: GCA_000378625

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30190	Colwellia piezophila gene for 16S rRNA, partial sequence, strain:Y223G	AB094412	1474		211668

GC content

@ref	GC-content (mol%)
30190	39
67770	39.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Colwellia piezophila ATCC BAA-637
NCBI: GCA_000378625

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	yes	65.70	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Colwellia piezophila ATCC BAA-637 ATCC BAA-637
NCBI: GCA_000378625.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	yes
125438	anaerobic	anaerobicⓘ	no	96.13	yes
125438	aerobic	aerobicⓘ	yes	73.43	no
125438	spore-forming	spore-formingⓘ	no	91.34	yes
125438	thermophilic	thermophileⓘ	no	96.48	no
125438	flagellated	motile2+ⓘ	yes	86.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Deciphering a Marine Bone-Degrading Microbiome Reveals a Complex Community Effort.	Borchert E, Garcia-Moyano A, Sanchez-Carrillo S, Dahlgren TG, Slaby BM, Bjerga GEK, Ferrer M, Franzenburg S, Hentschel U.	mSystems	10.1128/msystems.01218-20	2021
	Living at the Extremes: Extremophiles and the Limits of Life in a Planetary Context.	Merino N, Aronson HS, Bojanova DP, Feyhl-Buska J, Wong ML, Zhang S, Giovannelli D.	Front Microbiol	10.3389/fmicb.2019.00780	2019
Phylogeny	Colwellia marinimaniae sp. nov., a hyperpiezophilic species isolated from an amphipod within the Challenger Deep, Mariana Trench.	Kusube M, Kyaw TS, Tanikawa K, Chastain RA, Hardy KM, Cameron J, Bartlett DH.	Int J Syst Evol Microbiol	10.1099/ijsem.0.001671	2017
Phylogeny	Colwellia piezophila sp. nov., a novel piezophilic species from deep-sea sediments of the Japan Trench.	Nogi Y, Hosoya S, Kato C, Horikoshi K	Int J Syst Evol Microbiol	10.1099/ijs.0.03049-0	2004

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#30190	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26536 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Colwellia piezophila (JCM 11831, ATCC BAA-637, Y223G)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000378625

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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