Name: Muricauda flavescens SW-62
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133698

Type strain:

Species: Muricauda flavescens

Strain Designation: SW-62, KCMM 41645

Culture col. no.: KCCM 41645, JCM 11812, CIP 108791

Strain history: CIP <- 2005, JCM <- 2002, J. H. Yoon: strain SW-62

NCBI tax ID(s): 254954 (species)

SI-ID 138996

JCM 11812, CIP 108791

Section

Muricauda flavescens SW-62 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Salt lake near Hwajinpo Beach.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	Muricauda
	Species	Muricauda flavescens
	Full Scientific Name (LPSN)	Muricauda flavescens Yoon et al. 2005

Synonym

Allomuricauda flavescens

Information on morphological and physiological properties Morphology

[Ref.: #30192]	Gram stain	negative
[Ref.: #119369]	Gram stain	negative

[Ref.: #30192]	Cell length	4.25 µm

[Ref.: #30192]	Cell width	0.3 µm

[Ref.: #30192]	Cell shape	rod-shaped
[Ref.: #119369]	Cell shape	rod-shaped

[Ref.: #30192]	Motility	no
[Ref.: #119369]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #38314]

Culture medium

Marine agar (MA)

[Ref.: #38314]

Culture medium growth

[Ref.: #38314]

Culture medium composition

expand / minimize

[Ref.: #119369]

Culture medium

CIP Medium 13

[Ref.: #119369]

Culture medium growth

[Ref.: #119369]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #30192]		growth	10-44 °C
[Ref.: #30192]		optimum	33.5 °C
[Ref.: #38314]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #119369]		growth	15-41 °C
[Ref.: #119369]	no	growth	5 °C
[Ref.: #119369]	no	growth	45 °C

[Ref.: #30192]	Temperature range	mesophilic
[Ref.: #38314]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #119369]	Temperature range	psychrophilic
[Ref.: #119369]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #30192]			optimum	7
[Ref.: #30192]			growth	5.0-7.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30192]

Oxygen tolerance

aerobe

[Ref.: #30192]

Ability of spore formation

	Salt	Tested relation		Salt conc.
[Ref.: #30192]	NaCl		growth	0.1-9.0	%
[Ref.: #30192]	NaCl		optimum	2	%
[Ref.: #119369]	NaCl		growth	0-6	%
[Ref.: #119369]	NaCl	no	growth	8	%
[Ref.: #119369]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30192]	cellobiose ChEBI	+	carbon source
[Ref.: #30192]	esculin ChEBI	+	hydrolysis
[Ref.: #119369]	esculin ChEBI	+	hydrolysis
[Ref.: #30192]	fructose ChEBI	+	carbon source
[Ref.: #30192]	glucose ChEBI	+	carbon source
[Ref.: #119369]	hippurate ChEBI	+	hydrolysis
[Ref.: #30192]	lactose ChEBI	+	carbon source
[Ref.: #119369]	malonate ChEBI	-	assimilation
[Ref.: #30192]	maltose ChEBI	+	carbon source
[Ref.: #30192]	mannose ChEBI	+	carbon source
[Ref.: #30192]	melibiose ChEBI	+	carbon source
[Ref.: #119369]	nitrate ChEBI	-	reduction
[Ref.: #119369]	nitrite ChEBI	-	reduction
[Ref.: #30192]	raffinose ChEBI	+	carbon source
[Ref.: #30192]	succinate ChEBI	+	carbon source
[Ref.: #30192]	sucrose ChEBI	+	carbon source
[Ref.: #30192]	trehalose ChEBI	+	carbon source
[Ref.: #30192]	tween 20 ChEBI	+	carbon source
[Ref.: #30192]	tween 40 ChEBI	+	carbon source
[Ref.: #30192]	tween 60 ChEBI	+	carbon source
[Ref.: #30192]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #119369]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #119369]		acetoin ChEBI	+
[Ref.: #119369]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119369]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119369]	amylase	-
[Ref.: #119369]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119369]	caseinase	-	3.4.21.50
[Ref.: #30192]	catalase	+	1.11.1.6
[Ref.: #119369]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #30192]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #119369]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #119369]	gelatinase	+/-
[Ref.: #119369]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #119369]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119369]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119369]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119369]	oxidase	-
[Ref.: #119369]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #119369]	tryptophan deaminase	-
[Ref.: #119369]	tween esterase	+
[Ref.: #119369]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119369]	11461	-	+	-	-	-	+	+	-	+	+	+	+	-	-	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Salt lake near Hwajinpo Beach
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #119369]	Sample type/isolated from	Environment, Salt lake
[Ref.: #119369]	Geographic location (country and/or sea, region)	Near Hwajinpo Beach of the East Sea
[Ref.: #119369]	Country	Republic of Korea
[Ref.: #119369]	Country ISO 3 Code	KOR
[Ref.: #119369]	Continent	Asia
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #119369]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30192]	Muricauda flavescens strain SW-62 16S ribosomal RNA gene, partial sequence	AY445073	1481	GenBank	254954 tax ID

[Ref.: #30192]	GC-content	45.3 mol%
[Ref.: #67770]	GC-content	45.2 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #30192]

Culture collection no.

KCCM 41645, JCM 11812, CIP 108791

[Ref.: #91564]

SI-ID 138996

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Muricauda iocasae sp. nov., isolated from deep sea sediment of the South China Sea.	Liu SQ, Sun QL, Sun YY, Yu C, Sun L	Int J Syst Evol Microbiol	10.1099/ijsem.0.002870	2018	*
Phylogeny	Muricauda antarctica sp. nov., a marine member of the Flavobacteriaceae isolated from Antarctic seawater.	Wu YH, Yu PS, Zhou YD, Xu L, Wang CS, Wu M, Oren A, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.048355-0	2013	*
Phylogeny	Muricauda taeanensis sp. nov., isolated from a marine tidal flat.	Kim JM, Jin HM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.047647-0	2013	*
Phylogeny	Muricauda flavescens sp. nov. and Muricauda aquimarina sp. nov., isolated from a salt lake near Hwajinpo Beach of the East Sea in Korea, and emended description of the genus Muricauda.	Yoon JH, Lee MH, Oh TK, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.03051-0	2005	*
Phylogeny	Muricauda pacifica sp. nov., isolated from seawater of the South Pacific Gyre.	Zhang Z, Gao X, Qiao Y, Wang Y, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000542	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30192

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26538 (see below)

#38314 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#91564

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138996.1 )

#119369 Collection of Institut Pasteur ; Curators of the CIP; CIP 108791

#26538

IJSEM 1015 2005 ( DOI 10.1099/ijs.0.03051-0 , PubMed 15879227 )

* These data were automatically processed and therefore are not curated

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