Name: Pontibacter populi HYL7-15
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133688

Type strain:

Species: Pontibacter populi

Strain Designation: HYL7-15

Culture col. no.: CCTCC AB 206239, NRRL B-59488

NCBI tax ID(s): 890055 (species)

Section

Pontibacter populi HYL7-15 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Pontibacter*
	Species	**Pontibacter populi**
	Full Scientific Name (LPSN)	Pontibacter populi Xu et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30161]	Gram stain	negative

[Ref.: #30161]	Cell length	1-2.2 µm

[Ref.: #30161]	Cell width	0.4-0.6 µm

[Ref.: #30161]	Cell shape	rod-shaped

[Ref.: #30161]	Motility	no

[Ref.: #30161]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30161]			growth	04-37 °C
[Ref.: #30161]			optimum	30 °C

[Ref.: #30161]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30161]			optimum	7
[Ref.: #30161]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30161]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30161]		NaCl		growth	0-4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30161]	esculin ChEBI	+	hydrolysis
[Ref.: #30161]	glucose ChEBI	+	carbon source
[Ref.: #30161]	mannose ChEBI	+	carbon source
[Ref.: #30161]	sucrose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30161]	acid phosphatase	+	3.1.3.2
[Ref.: #30161]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30161]	catalase	+	1.11.1.6
[Ref.: #30161]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30161]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30161]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ223078 (>99% sequence identity) for Pontibacter populi subclade from Microbeatlas

Aquatic Samples	61
Soil Samples	340
Animal Samples	38
Plant Samples	17
Total Samples	456

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30161]	Pontibacter populi strain HYL7-15 16S ribosomal RNA gene, partial sequence	HQ223078	1439	GenBank	890055 tax ID

[Ref.: #30161]

GC-content

44.9 mol%

Availability in culture collections External links

[Ref.: #30161]

Culture collection no.

CCTCC AB 206239, NRRL B-59488

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pontibacter populi sp. nov., isolated from the soil of a Euphrates poplar (Populus euphratica) forest.	Xu M, Wang Y, Dai J, Jiang F, Rahman E, Peng F, Fang C	Int J Syst Evol Microbiol	10.1099/ijs.0.030122-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30161

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26512 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26512

IJSEM 665 2012 ( DOI 10.1099/ijs.0.030122-0 , PubMed 21551332 )

* These data were automatically processed and therefore are not curated

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