Name: Pedobacter boryungensis BR-9
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133662

Type strain:

Species: Pedobacter boryungensis

Strain Designation: BR-9

Culture col. no.: KCTC 23344, CCUG 60024

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 869962 (species)

SI-ID 410897

CCUG 60024

Special Collections

Section

Pedobacter boryungensis BR-9 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Pedobacter*
	Species	**Pedobacter boryungensis**
	Full Scientific Name (LPSN)	Pedobacter boryungensis Jung et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30005]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #30005]	Cell length	2.0-5.0 µm

[Ref.: #30005]	Cell width	0.2-0.5 µm

[Ref.: #30005]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #30005]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #62186]

Incubation period

1 day

[Ref.: #30005]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30005]	growth	04-35 °C
[Ref.: #30005]	optimum	30 °C
[Ref.: #62186]	growth	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #30005]			optimum	6.0-7.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30005]	Oxygen tolerance	aerobe
[Ref.: #62186]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #30005]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30005]		NaCl		growth	<1	%

[Ref.: #67771]

Observation

quinones: MK-7

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30005]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30005]	Sample type/isolated from	soil

[Ref.: #62186]	Sample type/isolated from	Soil
[Ref.: #62186]	Sampling date	2008
[Ref.: #62186]	Geographic location (country and/or sea, region)	Boryung
[Ref.: #62186]	Country	Republic of Korea
[Ref.: #62186]	Country ISO 3 Code	KOR
[Ref.: #62186]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Boryung
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30005]	Pedobacter boryungensis strain BR-9 16S ribosomal RNA gene, partial sequence	HM640986	1443	GenBank ENA	869962 tax ID

[Ref.: #30005]	GC-content	38.5 mol%
[Ref.: #67771]	GC-content	38.5 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #30005]

Culture collection no.

KCTC 23344, CCUG 60024

[Ref.: #91549]

SI-ID 410897

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pedobacter gandavensis sp. nov., Pedobacter foliorum sp. nov. and Pedobacter planticolens sp. nov., isolated from leaves of Arabidopsis thaliana.	Qi SS, Cnockaert M, Carlier A, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijsem.0.004667	2021	*
Phylogeny	Pedobacter daejeonensis sp. nov. and Pedobacter trunci sp. nov., isolated from an ancient tree trunk, and emended description of the genus Pedobacter.	Du J, Singh H, Ngo HTT, Won KH, Kim KY, Yi TH	Int J Syst Evol Microbiol	10.1099/ijs.0.000087	2015	*
Phylogeny	Pedobacter lotistagni sp. nov. isolated from lotus pond water.	Singh H, Du J, Ngo HT, Kim KY, Yi TH	Antonie Van Leeuwenhoek	10.1007/s10482-015-0387-5	2015	*
Phylogeny	Pedobacter boryungensis sp. nov., isolated from soil.	Jung YT, Lee SY, Choi WC, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.028183-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30005

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26369 (see below)

#62186 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60024
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#91549

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID410897.1 )

#26369

IJSEM 13 2012 ( DOI 10.1099/ijs.0.028183-0 , PubMed 21257683 )

* These data were automatically processed and therefore are not curated

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