Name: Legionella nagasakiensis CDC-1796-JAP-E
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133651

Type strain:

Species: Legionella nagasakiensis

Strain Designation: CDC-1796-JAP-E

Culture col. no.: ATCC BAA-1557, JCM 15315

Strain history: R. F. Benson CDC-1796-JAP-E <-- A. Saito 82-059.

NCBI tax ID(s): 535290 (species)

Other strains from Legionella nagasakiensis

L. nagasakiensis HYMO-6, DSM 24727, JCM 17450, KCTC ...
L. nagasakiensis JCM 15316

Section

Legionella nagasakiensis CDC-1796-JAP-E is a mesophilic, Gram-negative, motile bacterium that was isolated from Well water.

Gram-negative
motile
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Legionellales*
	Family	*Legionellaceae*
	Genus	*Legionella*
	Species	**Legionella nagasakiensis**
	Full Scientific Name (LPSN)	Legionella nagasakiensis Yang et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #29939]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.995

[Ref.: #29939]	Cell shape	rod-shaped

[Ref.: #29939]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

[Ref.: #67770]

Observation

quinones: Q-10

	Enzyme	Enzyme activity	EC number
[Ref.: #29939]	acid phosphatase	+	3.1.3.2
[Ref.: #29939]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29939]	catalase	+	1.11.1.6
[Ref.: #29939]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29939]	Sample type/isolated from	Well water

[Ref.: #67770]	Sample type/isolated from	Well water in Nagasaki
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Engineered	#Built environment	#Water reservoir (Aquarium/pool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU701006 (>99% sequence identity) for Legionella nagasakiensis subclade from Microbeatlas

Aquatic Samples	102
Soil Samples	55
Animal Samples	14
Plant Samples	12
Total Samples	183

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29939]	Legionella nagasakiensis strain CDC-1796-JAP-E 16S ribosomal RNA gene, partial sequence	EU701006	1466	GenBank	535290 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Legionella nagasakiensis JCM 15315	GCA_900639915	scaffold	GenBank	535290 tax ID
[Ref.: #66792]	Legionella nagasakiensis strain JCM 15315	535290.3	wgs	PATRIC	535290 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Legionella nagasakiensis JCM 15315 NCBI: GCA_900639915.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Legionella nagasakiensis strain JCM 15315 PATRIC: 535290.3
[Ref.: #69480]	gram-positive	no	98.425	yes
[Ref.: #69480]	anaerobic	no	98.094	no
[Ref.: #69480]	halophile	no	71.913	no
[Ref.: #69480]	spore-forming	no	93.293	no
[Ref.: #69480]	glucose-util	yes	69.247	no
[Ref.: #69480]	thermophile	no	95.641	yes
[Ref.: #69480]	aerobic	no	83.276	no
[Ref.: #69480]	motile	yes	85.848	yes
[Ref.: #69480]	glucose-ferment	no	86.839	no
[Ref.: #69480]	flagellated	no	79.127	no

Availability in culture collections External links

[Ref.: #29939]

Culture collection no.

ATCC BAA-1557, JCM 15315

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Legionella nagasakiensis sp. nov., isolated from water samples and from a patient with pneumonia.	Yang G, Benson RF, Ratcliff RM, Brown EW, Steigerwalt AG, Thacker WL, Daneshvar MI, Morey RE, Saito A, Fields BS	Int J Syst Evol Microbiol	10.1099/ijs.0.027193-0	2011	*
Phylogeny	The first case of Legionella nagasakiensis isolation from hot spring water.	Furuhata K, Edagawa A, Miyamoto H, Goto K, Yoshida S, Fukuyama M	Biocontrol Sci	10.4265/bio.16.171	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29939

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26310 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#26310

IJSEM 284 2012 ( DOI 10.1099/ijs.0.027193-0 , PubMed 21398499 )

* These data were automatically processed and therefore are not curated

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Legionella nagasakiensis JCM 15315

Legionella nagasakiensis strain JCM 15315

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