Legionella nagasakiensis (ATCC BAA-1557, JCM 15315, CDC-1796-JAP-E)

Name: Legionella nagasakiensis (ATCC BAA-1557, JCM 15315, CDC-1796-JAP-E)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133651

Type strain

Strain Designation CDC-1796-JAP-E

Culture col. no. ATCC BAA-1557 JCM 15315 CDC-1796-JAP-E

NCBI tax ID(s) 535290

Special Collections JCM Literature strains

Links

Legionella nagasakiensis CDC-1796-JAP-E is a mesophilic, Gram-negative, motile prokaryote that was isolated from Well water.

Gram-negative motile rod-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 286011

ATCC BAA-1557,JCM 15315

@ref 20215

Last LPSN update 2025-12-16 10:01:50

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Legionellales

Family Legionellaceae

Genus Legionella

Species Legionella nagasakiensis

Full scientific name Legionella nagasakiensis Yang et al. 2012

BacDive ID	Other strains from **Legionella nagasakiensis** (2)	Type strain
24146	L. nagasakiensis HYMO-6, DSM 24727, JCM 17450, KCTC 23560
161585	L. nagasakiensis JCM 15316

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
29939	negative	rod-shaped
125438	negative		99.479
125439	negative		99.4

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	92.6

Spore formation

@ref	Spore formation	Confidence
125438		90.024
125439		99.8

Observation

67770

Observationquinones: Q-10

Enzymes

@ref	Value	Activity	Ec
29939	acid phosphatase	+	3.1.3.2
29939	alkaline phosphatase	+	3.1.3.1
29939	catalase	+	1.11.1.6
29939	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	-
#Engineered	#Built environment	#Water reservoir (Aquarium/pool)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
29939	Well water
67770	Well water in Nagasaki	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU701006 (>99% sequence identity) for Legionella nagasakiensis subclade from Microbeatlas

Aquatic Samples	102
Soil Samples	55
Animal Samples	14
Plant Samples	12
Total Samples	183

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	Leg_nagasakiensis_JCM_15315.v1 assembly for Legionella nagasakiensis JCM 15315	scaffold	GCA_900639915	535290.3	2980218026	535290	67.16

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29939	Legionella nagasakiensis strain CDC-1796-JAP-E 16S ribosomal RNA gene, partial sequence	EU701006	1466		535290

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Legionella nagasakiensis JCM 15315
NCBI: GCA_900639915

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.80	no
125439	motility	BacteriaNetⓘ	yes	78.30	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Legionella nagasakiensis strain JCM 15315
PATRIC: 535290.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.48	yes
125438	anaerobic	anaerobicⓘ	no	93.08	no
125438	spore-forming	spore-formingⓘ	no	90.02	no
125438	aerobic	aerobicⓘ	no	60.83	no
125438	thermophilic	thermophileⓘ	no	96.22	yes
125438	flagellated	motile2+ⓘ	no	60.55	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	The first case of Legionella nagasakiensis isolation from hot spring water.	Furuhata K, Edagawa A, Miyamoto H, Goto K, Yoshida S, Fukuyama M	Biocontrol Sci	10.4265/bio.16.171	2011
Phylogeny	Legionella nagasakiensis sp. nov., isolated from water samples and from a patient with pneumonia.	Yang G, Benson RF, Ratcliff RM, Brown EW, Steigerwalt AG, Thacker WL, Daneshvar MI, Morey RE, Saito A, Fields BS	Int J Syst Evol Microbiol	10.1099/ijs.0.027193-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29939	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26310 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Legionella nagasakiensis (ATCC BAA-1557, JCM 15315, CDC-1796-JAP-E)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900639915

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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