Name: Klebsiella variicola LX3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133650

Type strain:

Species: Klebsiella variicola

Strain Designation: LX3

Culture col. no.: DSM 16265, JCM 12419, CCUG 57108, CIP 108642, LMG 23571

Strain history: X. Li LX3.

NCBI tax ID(s): 244366 (species)

Section

Klebsiella variicola LX3 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

Gram-negative
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Klebsiella*
	Species	**Klebsiella variicola**
	Full Scientific Name (LPSN)	Klebsiella variicola Rosenblueth et al. 2004

Synonym

Klebsiella singaporensis

Information on morphological and physiological properties Morphology

[Ref.: #29929]	Gram stain	negative
[Ref.: #29929]	Cell length	1.45 µm
[Ref.: #29929]	Cell width	0.7 µm
[Ref.: #29929]	Cell shape	rod-shaped
[Ref.: #29929]	Motility	no

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29929]	optimum	30 °C
[Ref.: #61197]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #29929]	Temperature range	mesophilic
[Ref.: #61197]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29929]			optimum	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29929]	Oxygen tolerance	facultative anaerobe
[Ref.: #61197]	Oxygen tolerance	aerobe

[Ref.: #29929]

Ability of spore formation

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29929]		citrate ChEBI	+	carbon source
[Ref.: #29929]		glucose ChEBI	+	carbon source

	Metabolite production	Metabolite
[Ref.: #29929]		indole ChEBI

	Physiological tests	Metabolite	Indole test
[Ref.: #29929]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29929]		catalase	+	1.11.1.6
[Ref.: #29929]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29929]	Sample type/isolated from	soil

[Ref.: #61197]	Sample type/isolated from	Soil of sugarcane field
[Ref.: #61197]	Country	Singapore
[Ref.: #61197]	Country ISO 3 Code	SGP
[Ref.: #61197]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil of sugarcane field
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC507453 (>99% sequence identity) for Klebsiella pneumoniae from Microbeatlas

Aquatic Samples	3887
Soil Samples	1141
Animal Samples	41102
Plant Samples	1362
Total Samples	47492

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Klebsiella variicola JCM 12419 gene for 16S ribosomal RNA, partial sequence	LC507453	1462	ENA	244366 tax ID
[Ref.: #29929]	Klebsiella singaporensis strain LX3 16S ribosomal RNA gene, partial sequence	AF250285	1282	GenBank	244366 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Klebsiella variicola JCM 12419	GCA_018324045	complete	GenBank	244366 tax ID	*
[Ref.: #66792]	Klebsiella variicola LMG 23571	GCA_001969305	complete	GenBank	244366 tax ID	*
[Ref.: #66792]	Klebsiella variicola strain JCM 12419	244366.635	complete	PATRIC	244366 tax ID	*
[Ref.: #66792]	Klebsiella variicola strain LMG 23571	244366.305	complete	PATRIC	244366 tax ID	*
[Ref.: #66792]	Klebsiella variicola LMG 23571	2916621918	complete	JGI IMG/M	244366 tax ID	*

[Ref.: #29929]	GC-content	56.4 mol%
[Ref.: #67770]	GC-content	56.4 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #29929]

Culture collection no.

DSM 16265, JCM 12419, CCUG 57108, CIP 108642, LMG 23571

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Klebsiella singaporensis sp. nov., a novel isomaltulose-producing bacterium.	Li X, Zhang D, Chen F, Ma J, Dong Y, Zhang L	Int J Syst Evol Microbiol	10.1099/ijs.0.02690-0	2004	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29929

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26300 (see below)

#61197 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57108

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26300

IJSEM 2131 2004 ( DOI 10.1099/ijs.0.02690-0 , PubMed 15545446 )

* These data were automatically processed and therefore are not curated

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