Name: Kordia algicida OT-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133649

Type strain:

Species: Kordia algicida

Strain Designation: OT-1

Culture col. no.: KCTC 8814P, NBRC 1000336

NCBI tax ID(s): 221066 (species)

SI-ID 132019

NBRC 1000336, NBRC 100336, KACC 15108

Special Collections

Section

Kordia algicida OT-1 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from seawater.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Kordia*
	Species	**Kordia algicida**
	Full Scientific Name (LPSN)	Kordia algicida Sohn et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #29928]	Gram stain	negative
[Ref.: #26299]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97.481

[Ref.: #29928]	Cell length	3.5 µm
[Ref.: #26299]	Cell length	2-5 µm

[Ref.: #29928]	Cell width	0.4 µm
[Ref.: #26299]	Cell width	0.3-0.5 µm

[Ref.: #29928]	Cell shape	rod-shaped
[Ref.: #26299]	Cell shape	rod-shaped

[Ref.: #29928]	Motility	no
[Ref.: #26299]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93

[Ref.: #26299]	Colony color	Yellow
[Ref.: #26299]	Colony shape	circular
[Ref.: #26299]	Cultivation medium used	ZoBell 2216e

[Ref.: #29928]	Pigment production	yes
[Ref.: #26299]	Pigment production	no
[Ref.: #26299]	Pigment name	Flexirubin
[Ref.: #26299]	Pigment production	yes
[Ref.: #26299]	Pigment name	Carotenoid

Information on culture and growth conditions Culture and growth conditions

[Ref.: #26299]

Culture medium

ZoBell 2216e

[Ref.: #26299]

Culture medium growth

[Ref.: #26299]

Culture medium

TSA plus sea water

[Ref.: #26299]

Culture medium growth

[Ref.: #26299]

Culture medium

Aux medium

[Ref.: #26299]

Culture medium growth

		Temperature
[Ref.: #26299]	optimum	30 °C
[Ref.: #26299]	growth	5-40 °C
[Ref.: #29928]	growth	04-30 °C
[Ref.: #29928]	optimum	30 °C

		pH
[Ref.: #29928]	optimum	7.5
[Ref.: #26299]	optimum	7-8
[Ref.: #26299]	growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29928]	Oxygen tolerance	aerobe
[Ref.: #26299]	Oxygen tolerance	obligate aerobe

[Ref.: #26299]	Halophily / tolerance level	halophilic
[Ref.: #26299]	Halophily / tolerance level	halophilic

	Salt		Salt conc.
[Ref.: #29928]	NaCl	growth	01-05	%
[Ref.: #29928]	NaCl	optimum	3	%
[Ref.: #26299]	NaCl	growth	1-5	%
[Ref.: #26299]	NaCl	optimum	3	%

[Ref.: #26299]	Observation	abilty to kill and lyse several marine microalgal species
[Ref.: #26299]	Observation	requires sea salts (Na+, Ca2+, Mg2+) and organic nitrogen

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #26299]	2,3-butanediol ChEBI	-	oxidation
[Ref.: #26299]	2-hydroxybutyrate ChEBI	-	oxidation
[Ref.: #26299]	2-oxobutanoate ChEBI	-	oxidation
[Ref.: #26299]	2-oxoglutarate ChEBI	+	oxidation
[Ref.: #26299]	2-oxopentanoate ChEBI	-	oxidation
[Ref.: #26299]	3-hydroxybutyrate ChEBI	-	oxidation
[Ref.: #26299]	4-hydroxybutyrate ChEBI	-	oxidation
[Ref.: #26299]	4-hydroxyphenylacetic acid ChEBI	-	oxidation
[Ref.: #26299]	acetate ChEBI	-	oxidation
[Ref.: #26299]	agar ChEBI	-	degradation
[Ref.: #26299]	alginate ChEBI	-	degradation
[Ref.: #26299]	alpha-cyclodextrin ChEBI	+	oxidation
[Ref.: #26299]	alpha-D-glucose ChEBI	+	oxidation
[Ref.: #26299]	alpha-lactose ChEBI	-	oxidation
[Ref.: #26299]	ammonium ChEBI	-	nitrogen source
[Ref.: #29928]	aspartate ChEBI	+	carbon source
[Ref.: #26299]	bromosuccinate ChEBI	-	oxidation
[Ref.: #26299]	carboxymethylcellulose ChEBI	-	degradation
[Ref.: #26299]	cellobiose ChEBI	-	oxidation
[Ref.: #26299]	cellulose ChEBI	-	degradation
[Ref.: #26299]	chitin ChEBI	-	degradation
[Ref.: #26299]	cis-aconitate ChEBI	-	oxidation
[Ref.: #29928]	citrate ChEBI	+	carbon source
[Ref.: #26299]	citrate ChEBI	+	oxidation
[Ref.: #26299]	D-alanine ChEBI	-	oxidation
[Ref.: #26299]	D-arabitol ChEBI	-	oxidation
[Ref.: #26299]	D-fructose ChEBI	-	oxidation
[Ref.: #26299]	D-galactonic acid lactone ChEBI	-	oxidation
[Ref.: #26299]	D-galactose ChEBI	-	oxidation
[Ref.: #26299]	D-galacturonic acid ChEBI	-	oxidation
[Ref.: #26299]	D-gluconate ChEBI	-	oxidation
[Ref.: #26299]	D-glucosaminic acid ChEBI	-	oxidation
[Ref.: #26299]	D-glucose 6-phosphate ChEBI	+	oxidation
[Ref.: #26299]	D-glucuronate ChEBI	+	oxidation
[Ref.: #26299]	D-mannitol ChEBI	+	oxidation
[Ref.: #26299]	D-mannose ChEBI	+	oxidation
[Ref.: #26299]	D-psicose ChEBI	-	oxidation
[Ref.: #26299]	D-saccharate ChEBI	-	oxidation
[Ref.: #26299]	D-serine ChEBI	-	oxidation
[Ref.: #26299]	D-sorbitol ChEBI	-	oxidation
[Ref.: #26299]	D-trehalose ChEBI	-	oxidation
[Ref.: #29928]	dextrin ChEBI	+	carbon source
[Ref.: #26299]	dextrin ChEBI	+	oxidation
[Ref.: #29928]	DL-carnitine ChEBI	+	carbon source
[Ref.: #26299]	DL-carnitine ChEBI	+	oxidation
[Ref.: #26299]	erythritol ChEBI	+	oxidation
[Ref.: #26299]	ethanolamine ChEBI	-	oxidation
[Ref.: #26299]	formate ChEBI	-	oxidation
[Ref.: #26299]	gamma-aminobutyric acid ChEBI	-	oxidation
[Ref.: #29928]	gelatin ChEBI	+	carbon source
[Ref.: #26299]	gelatin ChEBI	+	degradation
[Ref.: #26299]	gentiobiose ChEBI	+	oxidation
[Ref.: #29928]	glucose ChEBI	+	carbon source
[Ref.: #26299]	glucose ChEBI	-	builds acid from
[Ref.: #26299]	glucose 1-phosphate ChEBI	+	oxidation
[Ref.: #26299]	glucuronamide ChEBI	-	oxidation
[Ref.: #29928]	glutamate ChEBI	+	carbon source
[Ref.: #26299]	glycerol ChEBI	-	oxidation
[Ref.: #26299]	glycerol 1-phosphate ChEBI	-	oxidation
[Ref.: #29928]	glycogen ChEBI	+	carbon source
[Ref.: #26299]	glycogen ChEBI	+	oxidation
[Ref.: #26299]	hydroxyproline ChEBI	-	oxidation
[Ref.: #26299]	inosine ChEBI	-	oxidation
[Ref.: #26299]	inulin ChEBI	-	degradation
[Ref.: #26299]	itaconate ChEBI	-	oxidation
[Ref.: #29928]	L-alaninamide ChEBI	+	carbon source
[Ref.: #26299]	L-alaninamide ChEBI	+	oxidation
[Ref.: #26299]	L-alanine ChEBI	-	oxidation
[Ref.: #26299]	L-alanylglycine ChEBI	-	oxidation
[Ref.: #26299]	L-arabinose ChEBI	-	oxidation
[Ref.: #26299]	L-asparagine ChEBI	-	oxidation
[Ref.: #26299]	L-aspartate ChEBI	+	oxidation
[Ref.: #26299]	L-fucose ChEBI	-	oxidation
[Ref.: #26299]	L-glutamate ChEBI	+	oxidation
[Ref.: #26299]	L-histidine ChEBI	-	oxidation
[Ref.: #26299]	L-leucine ChEBI	-	oxidation
[Ref.: #26299]	L-ornithine ChEBI	+	oxidation
[Ref.: #26299]	L-phenylalanine ChEBI	-	oxidation
[Ref.: #26299]	L-proline ChEBI	+	oxidation
[Ref.: #26299]	L-pyroglutamic acid ChEBI	-	oxidation
[Ref.: #26299]	L-rhamnose ChEBI	-	oxidation
[Ref.: #26299]	L-serine ChEBI	-	oxidation
[Ref.: #26299]	L-threonine ChEBI	+	oxidation
[Ref.: #29928]	lactate ChEBI	+	carbon source
[Ref.: #26299]	lactate ChEBI	+	oxidation
[Ref.: #26299]	lactulose ChEBI	-	oxidation
[Ref.: #26299]	malonate ChEBI	-	oxidation
[Ref.: #29928]	maltose ChEBI	+	carbon source
[Ref.: #26299]	maltose hydrate	+	oxidation
[Ref.: #29928]	mannitol ChEBI	+	carbon source
[Ref.: #29928]	mannose ChEBI	+	carbon source
[Ref.: #26299]	melibiose ChEBI	-	oxidation
[Ref.: #26299]	methyl D-glucoside ChEBI	-	oxidation
[Ref.: #26299]	methyl pyruvate ChEBI	-	oxidation
[Ref.: #26299]	monomethyl succinate ChEBI	-	oxidation
[Ref.: #26299]	myo-inositol ChEBI	-	oxidation
[Ref.: #26299]	N-acetylgalactosamine ChEBI	-	oxidation
[Ref.: #29928]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #26299]	N-acetylglucosamine ChEBI	+	oxidation
[Ref.: #29928]	nitrate ChEBI	+	reduction
[Ref.: #26299]	nitrate ChEBI	-	nitrogen source
[Ref.: #26299]	nitrate ChEBI	+	reduction
[Ref.: #29928]	ornithine ChEBI	+	carbon source
[Ref.: #26299]	pectin ChEBI	-	degradation
[Ref.: #26299]	phenylethylamine ChEBI	-	oxidation
[Ref.: #29928]	proline ChEBI	+	carbon source
[Ref.: #26299]	propionate ChEBI	-	oxidation
[Ref.: #26299]	putrescine ChEBI	-	oxidation
[Ref.: #26299]	quinate ChEBI	+	oxidation
[Ref.: #29928]	raffinose ChEBI	+	carbon source
[Ref.: #26299]	raffinose ChEBI	+	oxidation
[Ref.: #29928]	ribitol ChEBI	+	carbon source
[Ref.: #26299]	ribitol ChEBI	+	oxidation
[Ref.: #26299]	sebacic acid ChEBI	-	oxidation
[Ref.: #26299]	skimmed milk	+	degradation
[Ref.: #26299]	starch ChEBI	+	degradation
[Ref.: #26299]	succinamate ChEBI	-	oxidation
[Ref.: #29928]	succinate ChEBI	+	carbon source
[Ref.: #26299]	succinate ChEBI	+	oxidation
[Ref.: #29928]	sucrose ChEBI	+	carbon source
[Ref.: #26299]	sucrose ChEBI	+	oxidation
[Ref.: #29928]	threonine ChEBI	+	carbon source
[Ref.: #26299]	thymidine ChEBI	-	oxidation
[Ref.: #26299]	turanose ChEBI	-	oxidation
[Ref.: #26299]	tween 40 ChEBI	-	oxidation
[Ref.: #26299]	tween 80 ChEBI	-	oxidation
[Ref.: #26299]	urea ChEBI	-	nitrogen source
[Ref.: #29928]	uridine ChEBI	+	carbon source
[Ref.: #26299]	uridine ChEBI	+	oxidation
[Ref.: #26299]	urocanic acid ChEBI	-	oxidation
[Ref.: #26299]	xylitol ChEBI	-	oxidation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #26299]		hydrogen sulfide ChEBI	no
[Ref.: #26299]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #26299]	agarase	-	3.2.1.81
[Ref.: #26299]	amylase	+
[Ref.: #26299]	beta-galactosidase	-	3.2.1.23
[Ref.: #26299]	beta-glucosidase	-	3.2.1.21
[Ref.: #26299]	caseinase	+	3.4.21.50
[Ref.: #26299]	catalase	-	1.11.1.6
[Ref.: #29928]	cytochrome oxidase	+	1.9.3.1
[Ref.: #26299]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29928]	gelatinase	+
[Ref.: #26299]	gelatinase	+
[Ref.: #26299]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29928]	Sample type/isolated from	seawater

[Ref.: #26299]	Sample type/isolated from	sea water of Masan Bay, during an outbreak of red tide
[Ref.: #26299]	Geographic location (country and/or sea, region)	Masan Bay
[Ref.: #26299]	Country	Republic of Korea
[Ref.: #26299]	Country ISO 3 Code	KOR
[Ref.: #26299]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Protozoa	#Dinoflagellate

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY195836 (>99% sequence identity) for Kordia algicida subclade from Microbeatlas

Aquatic Samples	127
Soil Samples	4
Animal Samples	3
Plant Samples	2
Total Samples	136

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #26299]	Kordia algicida 16S ribosomal RNA gene, partial sequence	AY195836		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kordia algicida OT-1	GCA_000154725	scaffold	GenBank ENA	391587 tax ID	*
[Ref.: #66792]	Kordia algicida OT-1	391587.3	wgs	PATRIC	391587 tax ID	*
[Ref.: #66792]	Kordia algicida OT-1	641380434	draft	JGI IMG/M	391587 tax ID	*

[Ref.: #29928]	GC-content	34 mol%
[Ref.: #26299]	GC-content	34 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kordia algicida OT-1 OT-1 NCBI: GCA_000154725.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.481	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.293	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.718	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.333	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.424	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93	yes

Availability in culture collections External links

[Ref.: #29928]

Culture collection no.

KCTC 8814P, NBRC 1000336

[Ref.: #91542]

SI-ID 132019

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kordia antarctica sp. nov., isolated from Antarctic seawater.	Baek K, Choi A, Kang I, Lee K, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.052738-0	2013	*
Phylogeny	Fulvibacter tottoriensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from marine sediment.	Khan ST, Nakagawa Y, Harayama S	Int J Syst Evol Microbiol	10.1099/ijs.0.65554-0	2008	*
Metabolism	Native Alanine Substitution in the Glycine Hinge Modulates Conformational Flexibility of Heme Nitric Oxide/Oxygen (H-NOX) Sensing Proteins.	Hespen CW, Bruegger JJ, Guo Y, Marletta MA	ACS Chem Biol	10.1021/acschembio.8b00248	2018	*
Phylogeny	Kordiaulvae sp. nov., a bacterium isolated from the surface of green marine algae Ulva sp.	Qi F, Huang Z, Lai Q, Li D, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001098	2016	*
Genetics	Genome sequence of the algicidal bacterium Kordia algicida OT-1.	Lee HS, Kang SG, Kwon KK, Lee JH, Kim SJ	J Bacteriol	10.1128/JB.05241-11	2011	*
Phylogeny	Kordia algicida gen. nov., sp. nov., an algicidal bacterium isolated from red tide.	Sohn JH, Lee JH, Yi H, Chun J, Bae KS, Ahn TY, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.02689-0	2004	*
	Exploring Microdiversity in Novel Kordia sp. (Bacteroidetes) with Proteorhodopsin from the Tropical Indian Ocean via Single Amplified Genomes.	Royo-Llonch M, Ferrera I, Cornejo-Castillo FM, Sanchez P, Salazar G, Stepanauskas R, Gonzalez JM, Sieracki ME, Speich S, Stemmann L, Pedros-Alio C, Acinas SG	Front Microbiol	10.3389/fmicb.2017.01317	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#26299

IJSEM 675 2004 ( DOI 10.1099/ijs.0.02689-0 , PubMed 15143006 )

#29928

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26299 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91542

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID132019.1 )

#26299

IJSEM 675 2004 ( DOI 10.1099/ijs.0.02689-0 , PubMed 15143006 )

* These data were automatically processed and therefore are not curated

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Kordia algicida OT-1 OT-1

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