Name: Fodinibius salinus DSM 21935
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133644

Type strain:

Species: Fodinibius salinus

Culture col. no.: DSM 21935, ACCC 10716, YIM D17

Strain history: <- X.-L. Cui, YIM <- J.-H. Liu and Y.-X. Wang, YIM

NCBI tax ID(s): 860790 (species)

SI-ID 403871

DSM 21935

Special Collections

Section

Fodinibius salinus DSM 21935 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from hypersaline environment.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Balneolota*
	Class	*Balneolia*
	Order	*Balneolales*
	Family	*Balneolaceae*
	Genus	*Fodinibius*
	Species	**Fodinibius salinus**
	Full Scientific Name (LPSN)	Fodinibius salinus Wang et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #29903]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %93.042

[Ref.: #29903]	Cell length	1.0-3.0 µm

[Ref.: #29903]	Cell width	0.3 µm

[Ref.: #29903]	Cell shape	rod-shaped

[Ref.: #29903]	Motility	no

[Ref.: #29903]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16044]

Culture medium

MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)

[Ref.: #16044]

Culture medium growth

[Ref.: #16044]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16044]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16044]	growth	28 °C
[Ref.: #29903]	growth	25-45 °C
[Ref.: #29903]	optimum	37 °C

	pH	Kind of pH		pH
[Ref.: #29903]			optimum	7.5-8.0
[Ref.: #29903]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29903]

Oxygen tolerance

aerobe

[Ref.: #29903]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %92.125
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29903]		NaCl		growth	4-23	%
[Ref.: #29903]		NaCl		optimum	10-15	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29903]	citrate ChEBI	+	carbon source
[Ref.: #29903]	esculin ChEBI	+	hydrolysis
[Ref.: #29903]	nitrate ChEBI	+	reduction
[Ref.: #29903]	tween 40 ChEBI	+	carbon source
[Ref.: #29903]	tween 80 ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29903]	catalase	+	1.11.1.6
[Ref.: #29903]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29903]	gelatinase	+
[Ref.: #29903]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29903]	Sample type/isolated from	hypersaline environment

[Ref.: #16044]	Sample type/isolated from	sediment from a salt mine
[Ref.: #16044]	Geographic location (country and/or sea, region)	Yunnan,Fenggang salt mine (23°28' N 100° 43' E)
[Ref.: #16044]	Country	China
[Ref.: #16044]	Country ISO 3 Code	CHN
[Ref.: #16044]	Continent	Asia
[Ref.: #16044]	Geographic location	23.4667°/100.7170°
* marker position based on {}

Isolation sources categories

#Condition

#Saline

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM153810 (>99% sequence identity) for Fodinibius salinus subclade from Microbeatlas

Aquatic Samples	110
Soil Samples	19
Animal Samples
Plant Samples
Total Samples	129

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16044]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16044]	Fodinibius salinus strain YIM D17 16S ribosomal RNA gene, partial sequence	HM153810	1466	GenBank ENA	860790 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Fodinibius salinus DSM 21935	GCA_008124865	contig	GenBank ENA	860790 tax ID	*
[Ref.: #66792]	Fodinibius salinus strain DSM 21935	860790.3	wgs	PATRIC	860790 tax ID	*
[Ref.: #66792]	Fodinibius salinus DSM 21935	2728369742	draft	JGI IMG/M	860790 tax ID	*

[Ref.: #16044]	GC-content	43.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29903]	GC-content	43 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Fodinibius salinus strain DSM 21935 PATRIC: 860790.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Fodinibius salinus strain DSM 21935 PATRIC: 860790.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	93.042	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.43	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	79.084	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.125	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	84.821	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	81.006	no

Availability in culture collections External links

[Ref.: #16044]

Culture collection no.

DSM 21935, ACCC 10716, YIM D17

[Ref.: #91541]

SI-ID 403871

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aliifodinibius salipaludis sp. nov., Isolated from Saline-Alkaline Soil.	Zhao X, Miao S, Sun Y, Gong Q, Zhao J, Wang J, Zhang G	Curr Microbiol	10.1007/s00284-019-01863-w	2020	*
Phylogeny	Fodinibius salinus gen. nov., sp. nov., a moderately halophilic bacterium isolated from a salt mine.	Wang YX, Liu JH, Xiao W, Zhang XX, Li YQ, Lai YH, Ji KY, Wen ML, Cui XL	Int J Syst Evol Microbiol	10.1099/ijs.0.025502-0	2011	*

References

#16044

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21935

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29903

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26275 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91541

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403871.1 )

#26275

IJSEM 390 2012 ( DOI 10.1099/ijs.0.025502-0 , PubMed 21441370 )

* These data were automatically processed and therefore are not curated

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Fodinibius salinus strain DSM 21935

Fodinibius salinus strain DSM 21935

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